Analysis of interatomic Contacts of Structural Units in PDB entry:
7D3E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D3E entry

There are 4 chains in PDB entry 7D3E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 22	PHE 1551
B	LEU 4	GLN 275
C	GLN 22	PHE 1551
D	LEU 4	GLN 275

There are140 helices in PDB entry 7D3E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	84	Right-handed alpha
Helix 2	AA2	A	96	111	Right-handed alpha
Helix 3	AA3	A	175	180	Right-handed alpha
Helix 4	AA4	A	182	190	Right-handed alpha
Helix 5	AA5	A	227	231	Right-handed 310
Helix 6	AA6	A	242	267	Right-handed alpha
Helix 7	AA7	A	271	294	Right-handed alpha
Helix 8	AA8	A	294	301	Right-handed alpha
Helix 9	AA9	A	319	332	Right-handed alpha
Helix 10	AB1	A	377	391	Right-handed alpha
Helix 11	AB2	A	401	406	Right-handed alpha
Helix 12	AB3	A	418	430	Right-handed alpha
Helix 13	AB4	A	434	442	Right-handed alpha
Helix 14	AB5	A	449	453	Right-handed 310
Helix 15	AB6	A	454	460	Right-handed alpha
Helix 16	AB7	A	463	472	Right-handed alpha
Helix 17	AB8	A	475	479	Right-handed 310
Helix 18	AB9	A	480	489	Right-handed alpha
Helix 19	AC1	A	494	511	Right-handed alpha
Helix 20	AC2	A	518	522	Right-handed 310
Helix 21	AC3	A	525	534	Right-handed alpha
Helix 22	AC4	A	536	546	Right-handed alpha
Helix 23	AC5	A	548	552	Right-handed 310
Helix 24	AC6	A	591	619	Right-handed alpha
Helix 25	AC7	A	718	736	Right-handed alpha
Helix 26	AC8	A	746	754	Right-handed alpha
Helix 27	AC9	A	756	772	Right-handed alpha
Helix 28	AD1	A	772	777	Right-handed alpha
Helix 29	AD2	A	792	800	Right-handed alpha
Helix 30	AD3	A	803	811	Right-handed alpha
Helix 31	AD4	A	817	827	Right-handed alpha
Helix 32	AD5	A	837	848	Right-handed alpha
Helix 33	AD6	A	854	864	Right-handed alpha
Helix 34	AD7	A	873	887	Right-handed alpha
Helix 35	AD8	A	891	904	Right-handed alpha
Helix 36	AD9	A	918	925	Right-handed alpha
Helix 37	AE1	A	1027	1041	Right-handed alpha
Helix 38	AE2	A	1041	1069	Right-handed alpha
Helix 39	AE3	A	1074	1078	Right-handed 310
Helix 40	AE4	A	1080	1100	Right-handed alpha
Helix 41	AE5	A	1101	1104	Right-handed 310
Helix 42	AE6	A	1105	1113	Right-handed alpha
Helix 43	AE7	A	1115	1120	Right-handed 310
Helix 44	AE8	A	1122	1124	Right-handed 310
Helix 45	AE9	A	1125	1158	Right-handed alpha
Helix 46	AF1	A	1159	1167	Right-handed alpha
Helix 47	AF2	A	1181	1188	Right-handed alpha
Helix 48	AF3	A	1189	1209	Right-handed alpha
Helix 49	AF4	A	1210	1217	Right-handed alpha
Helix 50	AF5	A	1218	1226	Right-handed alpha
Helix 51	AF6	A	1227	1239	Right-handed alpha
Helix 52	AF7	A	1248	1270	Right-handed alpha
Helix 53	AF8	A	1312	1314	Right-handed 310
Helix 54	AF9	A	1340	1352	Right-handed alpha
Helix 55	AG1	A	1375	1380	Right-handed 310
Helix 56	AG2	A	1390	1393	Right-handed 310
Helix 57	AG3	A	1394	1409	Right-handed alpha
Helix 58	AG4	A	1429	1443	Right-handed alpha
Helix 59	AG5	A	1457	1461	Right-handed 310
Helix 60	AG6	A	1462	1474	Right-handed alpha
Helix 61	AG7	A	1497	1509	Right-handed alpha
Helix 62	AG8	A	1522	1539	Right-handed alpha
Helix 63	AG9	B	21	42	Right-handed alpha
Helix 64	AH1	B	43	45	Right-handed 310
Helix 65	AH2	B	50	73	Right-handed alpha
Helix 66	AH3	B	137	149	Right-handed alpha
Helix 67	AH4	B	151	160	Right-handed alpha
Helix 68	AH5	B	168	200	Right-handed alpha
Helix 69	AH6	B	202	230	Right-handed alpha
Helix 70	AH7	B	248	275	Right-handed alpha
Helix 71	AH8	C	74	84	Right-handed alpha
Helix 72	AH9	C	96	111	Right-handed alpha
Helix 73	AI1	C	175	180	Right-handed alpha
Helix 74	AI2	C	182	190	Right-handed alpha
Helix 75	AI3	C	227	231	Right-handed 310
Helix 76	AI4	C	242	267	Right-handed alpha
Helix 77	AI5	C	271	294	Right-handed alpha
Helix 78	AI6	C	294	301	Right-handed alpha
Helix 79	AI7	C	319	332	Right-handed alpha
Helix 80	AI8	C	377	391	Right-handed alpha
Helix 81	AI9	C	401	406	Right-handed alpha
Helix 82	AJ1	C	418	430	Right-handed alpha
Helix 83	AJ2	C	434	442	Right-handed alpha
Helix 84	AJ3	C	449	453	Right-handed 310
Helix 85	AJ4	C	454	460	Right-handed alpha
Helix 86	AJ5	C	463	472	Right-handed alpha
Helix 87	AJ6	C	475	479	Right-handed 310
Helix 88	AJ7	C	480	489	Right-handed alpha
Helix 89	AJ8	C	494	511	Right-handed alpha
Helix 90	AJ9	C	518	522	Right-handed 310
Helix 91	AK1	C	525	534	Right-handed alpha
Helix 92	AK2	C	536	546	Right-handed alpha
Helix 93	AK3	C	548	552	Right-handed 310
Helix 94	AK4	C	591	619	Right-handed alpha
Helix 95	AK5	C	718	736	Right-handed alpha
Helix 96	AK6	C	746	754	Right-handed alpha
Helix 97	AK7	C	756	772	Right-handed alpha
Helix 98	AK8	C	772	777	Right-handed alpha
Helix 99	AK9	C	792	800	Right-handed alpha
Helix 100	AL1	C	803	811	Right-handed alpha
Helix 101	AL2	C	817	827	Right-handed alpha
Helix 102	AL3	C	837	848	Right-handed alpha
Helix 103	AL4	C	854	864	Right-handed alpha
Helix 104	AL5	C	873	887	Right-handed alpha
Helix 105	AL6	C	891	904	Right-handed alpha
Helix 106	AL7	C	918	925	Right-handed alpha
Helix 107	AL8	C	1027	1041	Right-handed alpha
Helix 108	AL9	C	1041	1069	Right-handed alpha
Helix 109	AM1	C	1074	1078	Right-handed 310
Helix 110	AM2	C	1080	1100	Right-handed alpha
Helix 111	AM3	C	1101	1104	Right-handed 310
Helix 112	AM4	C	1105	1113	Right-handed alpha
Helix 113	AM5	C	1115	1120	Right-handed 310
Helix 114	AM6	C	1122	1124	Right-handed 310
Helix 115	AM7	C	1125	1158	Right-handed alpha
Helix 116	AM8	C	1159	1167	Right-handed alpha
Helix 117	AM9	C	1181	1188	Right-handed alpha
Helix 118	AN1	C	1189	1209	Right-handed alpha
Helix 119	AN2	C	1210	1217	Right-handed alpha
Helix 120	AN3	C	1218	1226	Right-handed alpha
Helix 121	AN4	C	1227	1239	Right-handed alpha
Helix 122	AN5	C	1248	1270	Right-handed alpha
Helix 123	AN6	C	1312	1314	Right-handed 310
Helix 124	AN7	C	1340	1352	Right-handed alpha
Helix 125	AN8	C	1375	1380	Right-handed 310
Helix 126	AN9	C	1390	1393	Right-handed 310
Helix 127	AO1	C	1394	1409	Right-handed alpha
Helix 128	AO2	C	1429	1443	Right-handed alpha
Helix 129	AO3	C	1457	1461	Right-handed 310
Helix 130	AO4	C	1462	1474	Right-handed alpha
Helix 131	AO5	C	1497	1509	Right-handed alpha
Helix 132	AO6	C	1522	1539	Right-handed alpha
Helix 133	AO7	D	21	42	Right-handed alpha
Helix 134	AO8	D	43	45	Right-handed 310
Helix 135	AO9	D	50	73	Right-handed alpha
Helix 136	AP1	D	137	149	Right-handed alpha
Helix 137	AP2	D	151	160	Right-handed alpha
Helix 138	AP3	D	168	200	Right-handed alpha
Helix 139	AP4	D	202	230	Right-handed alpha
Helix 140	AP5	D	248	275	Right-handed alpha

There are 20 sheets in PDB entry 7D3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	143	144	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	338	first strand
Strand 2	A	361	362	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	357	358	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	409	first strand
Strand 2	A	416	417	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	677	682	first strand
Strand 2	A	667	672	anti-parallel
Strand 3	A	657	663	anti-parallel
Strand 4	A	644	648	anti-parallel
Strand 5	A	712	715	anti-parallel
Strand 6	A	701	705	anti-parallel
Strand 7	A	690	693	anti-parallel
Strand 8	A	741	744	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	801	802	first strand
Strand 2	A	835	836	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1319	1322	first strand
Strand 2	A	1305	1310	anti-parallel
Strand 3	A	1363	1367	anti-parallel
Strand 4	A	1273	1283	anti-parallel
Strand 5	A	1287	1293	anti-parallel
Strand 6	A	1331	1337	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1490	1493	first strand
Strand 2	A	1448	1454	parallel
Strand 3	A	1416	1423	parallel
Strand 4	A	1382	1388	parallel
Strand 5	A	1514	1520	parallel
Strand 6	A	1543	1548	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	131	first strand
Strand 2	B	107	119	anti-parallel
Strand 3	B	94	103	anti-parallel
Strand 4	B	77	86	anti-parallel
Strand 5	B	246	247	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	238	first strand
Strand 2	B	241	243	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	143	144	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	338	first strand
Strand 2	C	361	362	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	351	first strand
Strand 2	C	357	358	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	408	409	first strand
Strand 2	C	416	417	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	677	682	first strand
Strand 2	C	667	672	anti-parallel
Strand 3	C	657	663	anti-parallel
Strand 4	C	644	648	anti-parallel
Strand 5	C	712	715	anti-parallel
Strand 6	C	701	705	anti-parallel
Strand 7	C	690	693	anti-parallel
Strand 8	C	741	744	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	802	first strand
Strand 2	C	835	836	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1319	1322	first strand
Strand 2	C	1305	1310	anti-parallel
Strand 3	C	1363	1367	anti-parallel
Strand 4	C	1273	1283	anti-parallel
Strand 5	C	1287	1293	anti-parallel
Strand 6	C	1331	1337	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1490	1493	first strand
Strand 2	C	1448	1454	parallel
Strand 3	C	1416	1423	parallel
Strand 4	C	1382	1388	parallel
Strand 5	C	1514	1520	parallel
Strand 6	C	1543	1548	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	131	first strand
Strand 2	D	107	119	anti-parallel
Strand 3	D	94	103	anti-parallel
Strand 4	D	77	86	anti-parallel
Strand 5	D	246	247	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	238	first strand
Strand 2	D	241	243	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D3E

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D3E