Analysis of interatomic Contacts of Structural Units in PDB entry:
7D3F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D3F entry

There are 4 chains in PDB entry 7D3F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 22	PHE 1551
B	LEU 4	GLN 275
C	GLN 22	PHE 1551
D	LEU 4	GLN 275

There are132 helices in PDB entry 7D3F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	84	Right-handed alpha
Helix 2	AA2	A	96	111	Right-handed alpha
Helix 3	AA3	A	175	180	Right-handed alpha
Helix 4	AA4	A	182	190	Right-handed alpha
Helix 5	AA5	A	227	231	Right-handed 310
Helix 6	AA6	A	242	267	Right-handed alpha
Helix 7	AA7	A	271	294	Right-handed alpha
Helix 8	AA8	A	294	301	Right-handed alpha
Helix 9	AA9	A	319	332	Right-handed alpha
Helix 10	AB1	A	377	391	Right-handed alpha
Helix 11	AB2	A	401	406	Right-handed alpha
Helix 12	AB3	A	418	430	Right-handed alpha
Helix 13	AB4	A	434	442	Right-handed alpha
Helix 14	AB5	A	449	453	Right-handed 310
Helix 15	AB6	A	454	460	Right-handed alpha
Helix 16	AB7	A	463	472	Right-handed alpha
Helix 17	AB8	A	475	479	Right-handed 310
Helix 18	AB9	A	480	489	Right-handed alpha
Helix 19	AC1	A	494	511	Right-handed alpha
Helix 20	AC2	A	518	522	Right-handed 310
Helix 21	AC3	A	525	535	Right-handed alpha
Helix 22	AC4	A	536	546	Right-handed alpha
Helix 23	AC5	A	548	552	Right-handed 310
Helix 24	AC6	A	591	619	Right-handed alpha
Helix 25	AC7	A	718	735	Right-handed alpha
Helix 26	AC8	A	746	753	Right-handed alpha
Helix 27	AC9	A	756	776	Right-handed alpha
Helix 28	AD1	A	792	799	Right-handed alpha
Helix 29	AD2	A	804	812	Right-handed alpha
Helix 30	AD3	A	817	828	Right-handed alpha
Helix 31	AD4	A	836	850	Right-handed alpha
Helix 32	AD5	A	851	864	Right-handed alpha
Helix 33	AD6	A	872	884	Right-handed alpha
Helix 34	AD7	A	894	902	Right-handed alpha
Helix 35	AD8	A	916	924	Right-handed alpha
Helix 36	AD9	A	1027	1069	Right-handed alpha
Helix 37	AE1	A	1080	1100	Right-handed alpha
Helix 38	AE2	A	1101	1104	Right-handed 310
Helix 39	AE3	A	1105	1114	Right-handed alpha
Helix 40	AE4	A	1115	1120	Right-handed 310
Helix 41	AE5	A	1122	1124	Right-handed 310
Helix 42	AE6	A	1125	1158	Right-handed alpha
Helix 43	AE7	A	1159	1167	Right-handed alpha
Helix 44	AE8	A	1181	1188	Right-handed alpha
Helix 45	AE9	A	1189	1209	Right-handed alpha
Helix 46	AF1	A	1210	1217	Right-handed alpha
Helix 47	AF2	A	1218	1226	Right-handed alpha
Helix 48	AF3	A	1227	1239	Right-handed alpha
Helix 49	AF4	A	1248	1270	Right-handed alpha
Helix 50	AF5	A	1312	1314	Right-handed 310
Helix 51	AF6	A	1340	1350	Right-handed alpha
Helix 52	AF7	A	1375	1380	Right-handed 310
Helix 53	AF8	A	1392	1409	Right-handed alpha
Helix 54	AF9	A	1429	1443	Right-handed alpha
Helix 55	AG1	A	1457	1461	Right-handed 310
Helix 56	AG2	A	1462	1474	Right-handed alpha
Helix 57	AG3	A	1497	1509	Right-handed alpha
Helix 58	AG4	A	1522	1539	Right-handed alpha
Helix 59	AG5	B	21	42	Right-handed alpha
Helix 60	AG6	B	43	45	Right-handed 310
Helix 61	AG7	B	49	73	Right-handed alpha
Helix 62	AG8	B	137	149	Right-handed alpha
Helix 63	AG9	B	151	161	Right-handed alpha
Helix 64	AH1	B	168	200	Right-handed alpha
Helix 65	AH2	B	202	230	Right-handed alpha
Helix 66	AH3	B	248	275	Right-handed alpha
Helix 67	AH4	C	74	84	Right-handed alpha
Helix 68	AH5	C	96	111	Right-handed alpha
Helix 69	AH6	C	175	180	Right-handed alpha
Helix 70	AH7	C	182	190	Right-handed alpha
Helix 71	AH8	C	227	231	Right-handed 310
Helix 72	AH9	C	242	267	Right-handed alpha
Helix 73	AI1	C	271	294	Right-handed alpha
Helix 74	AI2	C	294	301	Right-handed alpha
Helix 75	AI3	C	319	332	Right-handed alpha
Helix 76	AI4	C	377	391	Right-handed alpha
Helix 77	AI5	C	401	406	Right-handed alpha
Helix 78	AI6	C	418	430	Right-handed alpha
Helix 79	AI7	C	434	442	Right-handed alpha
Helix 80	AI8	C	449	453	Right-handed 310
Helix 81	AI9	C	454	460	Right-handed alpha
Helix 82	AJ1	C	463	472	Right-handed alpha
Helix 83	AJ2	C	475	479	Right-handed 310
Helix 84	AJ3	C	480	489	Right-handed alpha
Helix 85	AJ4	C	494	511	Right-handed alpha
Helix 86	AJ5	C	518	522	Right-handed 310
Helix 87	AJ6	C	525	535	Right-handed alpha
Helix 88	AJ7	C	536	546	Right-handed alpha
Helix 89	AJ8	C	548	552	Right-handed 310
Helix 90	AJ9	C	591	619	Right-handed alpha
Helix 91	AK1	C	718	735	Right-handed alpha
Helix 92	AK2	C	746	753	Right-handed alpha
Helix 93	AK3	C	756	776	Right-handed alpha
Helix 94	AK4	C	792	799	Right-handed alpha
Helix 95	AK5	C	804	812	Right-handed alpha
Helix 96	AK6	C	817	828	Right-handed alpha
Helix 97	AK7	C	836	850	Right-handed alpha
Helix 98	AK8	C	851	864	Right-handed alpha
Helix 99	AK9	C	872	884	Right-handed alpha
Helix 100	AL1	C	894	902	Right-handed alpha
Helix 101	AL2	C	916	924	Right-handed alpha
Helix 102	AL3	C	1027	1069	Right-handed alpha
Helix 103	AL4	C	1080	1100	Right-handed alpha
Helix 104	AL5	C	1101	1104	Right-handed 310
Helix 105	AL6	C	1105	1114	Right-handed alpha
Helix 106	AL7	C	1115	1120	Right-handed 310
Helix 107	AL8	C	1122	1124	Right-handed 310
Helix 108	AL9	C	1125	1158	Right-handed alpha
Helix 109	AM1	C	1159	1167	Right-handed alpha
Helix 110	AM2	C	1181	1188	Right-handed alpha
Helix 111	AM3	C	1189	1209	Right-handed alpha
Helix 112	AM4	C	1210	1217	Right-handed alpha
Helix 113	AM5	C	1218	1226	Right-handed alpha
Helix 114	AM6	C	1227	1239	Right-handed alpha
Helix 115	AM7	C	1248	1270	Right-handed alpha
Helix 116	AM8	C	1312	1314	Right-handed 310
Helix 117	AM9	C	1340	1350	Right-handed alpha
Helix 118	AN1	C	1375	1380	Right-handed 310
Helix 119	AN2	C	1392	1409	Right-handed alpha
Helix 120	AN3	C	1429	1443	Right-handed alpha
Helix 121	AN4	C	1457	1461	Right-handed 310
Helix 122	AN5	C	1462	1474	Right-handed alpha
Helix 123	AN6	C	1497	1509	Right-handed alpha
Helix 124	AN7	C	1522	1539	Right-handed alpha
Helix 125	AN8	D	21	42	Right-handed alpha
Helix 126	AN9	D	43	45	Right-handed 310
Helix 127	AO1	D	49	73	Right-handed alpha
Helix 128	AO2	D	137	149	Right-handed alpha
Helix 129	AO3	D	151	161	Right-handed alpha
Helix 130	AO4	D	168	200	Right-handed alpha
Helix 131	AO5	D	202	230	Right-handed alpha
Helix 132	AO6	D	248	275	Right-handed alpha

There are 22 sheets in PDB entry 7D3F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	143	144	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	338	first strand
Strand 2	A	361	362	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	409	first strand
Strand 2	A	416	417	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	677	682	first strand
Strand 2	A	667	672	anti-parallel
Strand 3	A	657	663	anti-parallel
Strand 4	A	645	648	anti-parallel
Strand 5	A	712	715	anti-parallel
Strand 6	A	701	705	anti-parallel
Strand 7	A	690	693	anti-parallel
Strand 8	A	741	744	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	803	first strand
Strand 2	A	834	835	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1273	1275	first strand
Strand 2	A	1364	1367	anti-parallel
Strand 3	A	1305	1310	anti-parallel
Strand 4	A	1319	1322	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1277	1283	first strand
Strand 2	A	1287	1293	anti-parallel
Strand 3	A	1331	1337	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1490	1493	first strand
Strand 2	A	1448	1454	parallel
Strand 3	A	1416	1423	parallel
Strand 4	A	1382	1388	parallel
Strand 5	A	1514	1520	parallel
Strand 6	A	1543	1548	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	131	first strand
Strand 2	B	107	119	anti-parallel
Strand 3	B	94	103	anti-parallel
Strand 4	B	77	86	anti-parallel
Strand 5	B	246	247	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	238	first strand
Strand 2	B	241	243	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	143	144	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	338	first strand
Strand 2	C	361	362	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	351	first strand
Strand 2	C	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	408	409	first strand
Strand 2	C	416	417	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	677	682	first strand
Strand 2	C	667	672	anti-parallel
Strand 3	C	657	663	anti-parallel
Strand 4	C	645	648	anti-parallel
Strand 5	C	712	715	anti-parallel
Strand 6	C	701	705	anti-parallel
Strand 7	C	690	693	anti-parallel
Strand 8	C	741	744	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	802	803	first strand
Strand 2	C	834	835	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1273	1275	first strand
Strand 2	C	1364	1367	anti-parallel
Strand 3	C	1305	1310	anti-parallel
Strand 4	C	1319	1322	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1277	1283	first strand
Strand 2	C	1287	1293	anti-parallel
Strand 3	C	1331	1337	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1490	1493	first strand
Strand 2	C	1448	1454	parallel
Strand 3	C	1416	1423	parallel
Strand 4	C	1382	1388	parallel
Strand 5	C	1514	1520	parallel
Strand 6	C	1543	1548	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	131	first strand
Strand 2	D	107	119	anti-parallel
Strand 3	D	94	103	anti-parallel
Strand 4	D	77	86	anti-parallel
Strand 5	D	246	247	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	238	first strand
Strand 2	D	241	243	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D3F

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D3F