Analysis of interatomic Contacts of Structural Units in PDB entry:
7D3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D3M entry

There are 6 chains in PDB entry 7D3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 THR 2GLN 203
2
 ARG 13GLU 218
3
 GLY 1THR 219
4
 SER 15ALA 85
H
 GLN 1THR 145
L
 VAL 5LEU 112
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7D3M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
1
60 66Right-handed alpha
Helix 2
AA2
1
94 98Right-handed 310
Helix 3
AA3
2
92 98Right-handed alpha
Helix 4
AA4
2
136 143Right-handed 310
Helix 5
AA5
3
43 51Right-handed alpha
Helix 6
AA6
3
57 61Right-handed 310
Helix 7
AA7
3
89 96Right-handed alpha
Helix 8
AA8
4
27 32Right-handed alpha
Helix 9
AA9
H
60 65Right-handed 310
Helix 10
AB1
L
82 86Right-handed 310
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There are 18 sheets in PDB entry 7D3M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
40 42first strand
Strand 2
1
176 181anti-parallel
Strand 3
1
75 80anti-parallel
Strand 4
1
113 114anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
48 50first strand
Strand 2
1
167 169anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
126 127first strand
Strand 2
1
69 72anti-parallel
Strand 3
1
186 188anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
86 87first strand
Strand 2
1
105 106anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
15 19first strand
Strand 2
2
22 26anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
52 54first strand
Strand 2
2
198 211anti-parallel
Strand 3
2
65 68anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
52 54first strand
Strand 2
2
198 211anti-parallel
Strand 3
2
100 111anti-parallel
Strand 4
2
155 160anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
81 82first strand
Strand 2
2
177 183anti-parallel
Strand 3
2
121 127anti-parallel
Strand 4
2
145 148anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
53 54first strand
Strand 2
3
198 205anti-parallel
Strand 3
3
63 64anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
53 54first strand
Strand 2
3
198 205anti-parallel
Strand 3
3
105 112anti-parallel
Strand 4
3
154 159anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
100 101first strand
Strand 2
3
168 169anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
144 147first strand
Strand 2
3
118 126anti-parallel
Strand 3
3
183 192anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 7first strand
Strand 2
H
21 24anti-parallel
Strand 3
H
77 78anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
50 51first strand
Strand 2
H
57 58anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
67 68first strand
Strand 2
H
81 82anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
112 113first strand
Strand 2
H
129 130anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
20 25first strand
Strand 2
L
73 78anti-parallel
Strand 3
L
67 70anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
38 39first strand
Strand 2
L
49 51anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il