Analysis of interatomic Contacts of Structural Units in PDB entry:
7D3S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D3S entry

There are 6 chains in PDB entry 7D3S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	HIS 1	VAL 27
R	SER 130	TRP 406
A	GLN 12	LEU 384
B	GLN 1	ASN 340
G	THR 6	ARG 62
N	GLN 1	SER 128

There are 27 helices in PDB entry 7D3S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	1	27	Right-handed alpha
Helix 2	AA2	R	132	166	Right-handed alpha
Helix 3	AA3	R	167	171	Right-handed 310
Helix 4	AA4	R	173	200	Right-handed alpha
Helix 5	AA5	R	211	246	Right-handed alpha
Helix 6	AA6	R	250	281	Right-handed alpha
Helix 7	AA7	R	291	327	Right-handed alpha
Helix 8	AA8	R	334	346	Right-handed alpha
Helix 9	AA9	R	347	352	Right-handed alpha
Helix 10	AB1	R	365	377	Right-handed alpha
Helix 11	AB2	R	379	391	Right-handed alpha
Helix 12	AB3	R	392	405	Right-handed alpha
Helix 13	AB4	A	14	39	Right-handed alpha
Helix 14	AB5	A	52	60	Right-handed alpha
Helix 15	AB6	A	233	239	Right-handed 310
Helix 16	AB7	A	252	268	Right-handed alpha
Helix 17	AB8	A	283	294	Right-handed alpha
Helix 18	AB9	A	297	302	Right-handed alpha
Helix 19	AC1	A	321	343	Right-handed alpha
Helix 20	AC2	A	361	381	Right-handed alpha
Helix 21	AC3	B	2	24	Right-handed alpha
Helix 22	AC4	B	29	34	Right-handed alpha
Helix 23	AC5	G	7	21	Right-handed alpha
Helix 24	AC6	G	29	44	Right-handed alpha
Helix 25	AC7	N	28	32	Right-handed 310
Helix 26	AC8	N	74	76	Right-handed 310
Helix 27	AC9	N	87	91	Right-handed 310

There are 10 sheets in PDB entry 7D3S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	243	249	parallel
Strand 5	A	276	282	parallel
Strand 6	A	349	353	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	329	anti-parallel
Strand 4	B	318	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	46	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D3S

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D3S