Analysis of interatomic Contacts of Structural Units in PDB entry:
7D3U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D3U entry

There are 6 chains in PDB entry 7D3U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MET 1GLY 574
A
 VAL 1PRO 921
C
 MET 1THR 129
F
 MET 1ARG 85
G
 MET 1THR 111
E
 TRP 7ARG 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 7D3U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
4 7Right-handed 310
Helix 2
AA2
D
8 24Right-handed alpha
Helix 3
AA3
D
27 50Right-handed alpha
Helix 4
AA4
D
64 66Right-handed 310
Helix 5
AA5
D
79 102Right-handed alpha
Helix 6
AA6
D
108 126Right-handed alpha
Helix 7
AA7
D
128 147Right-handed alpha
Helix 8
AA8
D
156 188Right-handed alpha
Helix 9
AA9
D
193 197Right-handed 310
Helix 10
AB1
D
203 222Right-handed alpha
Helix 11
AB2
D
227 232Right-handed alpha
Helix 12
AB3
D
238 246Right-handed alpha
Helix 13
AB4
D
248 264Right-handed alpha
Helix 14
AB5
D
271 293Right-handed alpha
Helix 15
AB6
D
295 317Right-handed alpha
Helix 16
AB7
D
319 351Right-handed alpha
Helix 17
AB8
D
361 366Right-handed alpha
Helix 18
AB9
D
366 381Right-handed alpha
Helix 19
AC1
D
386 402Right-handed alpha
Helix 20
AC2
D
404 430Right-handed alpha
Helix 21
AC3
D
458 462Right-handed 310
Helix 22
AC4
D
527 547Right-handed alpha
Helix 23
AC5
D
548 560Right-handed alpha
Helix 24
AC6
D
565 573Right-handed alpha
Helix 25
AC7
A
2 24Right-handed alpha
Helix 26
AC8
A
28 46Right-handed alpha
Helix 27
AC9
A
70 95Right-handed alpha
Helix 28
AD1
A
101 120Right-handed alpha
Helix 29
AD2
A
123 143Right-handed alpha
Helix 30
AD3
A
145 148Right-handed 310
Helix 31
AD4
A
149 165Right-handed alpha
Helix 32
AD5
A
165 179Right-handed alpha
Helix 33
AD6
A
182 187Right-handed alpha
Helix 34
AD7
A
190 195Right-handed alpha
Helix 35
AD8
A
195 214Right-handed alpha
Helix 36
AD9
A
225 229Right-handed 310
Helix 37
AE1
A
230 240Right-handed alpha
Helix 38
AE2
A
242 253Right-handed alpha
Helix 39
AE3
A
254 256Right-handed 310
Helix 40
AE4
A
260 285Right-handed alpha
Helix 41
AE5
A
287 309Right-handed alpha
Helix 42
AE6
A
311 342Right-handed alpha
Helix 43
AE7
A
361 374Right-handed alpha
Helix 44
AE8
A
378 392Right-handed alpha
Helix 45
AE9
A
401 424Right-handed alpha
Helix 46
AF1
A
456 472Right-handed alpha
Helix 47
AF2
A
473 475Right-handed 310
Helix 48
AF3
A
476 485Right-handed alpha
Helix 49
AF4
A
503 521Right-handed alpha
Helix 50
AF5
A
522 531Right-handed alpha
Helix 51
AF6
A
539 541Right-handed 310
Helix 52
AF7
A
542 559Right-handed alpha
Helix 53
AF8
A
560 562Right-handed 310
Helix 54
AF9
A
565 570Right-handed alpha
Helix 55
AG1
A
570 588Right-handed alpha
Helix 56
AG2
A
599 601Right-handed 310
Helix 57
AG3
A
602 618Right-handed alpha
Helix 58
AG4
A
621 643Right-handed alpha
Helix 59
AG5
A
645 668Right-handed alpha
Helix 60
AG6
A
681 702Right-handed alpha
Helix 61
AG7
A
710 719Right-handed alpha
Helix 62
AG8
A
728 736Right-handed alpha
Helix 63
AG9
A
738 763Right-handed alpha
Helix 64
AH1
A
783 788Right-handed alpha
Helix 65
AH2
A
788 813Right-handed alpha
Helix 66
AH3
A
820 838Right-handed alpha
Helix 67
AH4
A
849 867Right-handed alpha
Helix 68
AH5
A
868 871Right-handed 310
Helix 69
AH6
A
889 913Right-handed alpha
Helix 70
AH7
C
2 18Right-handed alpha
Helix 71
AH8
C
23 45Right-handed alpha
Helix 72
AH9
C
65 91Right-handed alpha
Helix 73
AI1
C
104 108Right-handed 310
Helix 74
AI2
F
2 24Right-handed alpha
Helix 75
AI3
F
29 53Right-handed alpha
Helix 76
AI4
F
58 66Right-handed alpha
Helix 77
AI5
F
70 81Right-handed alpha
Helix 78
AI6
G
4 29Right-handed alpha
Helix 79
AI7
G
34 61Right-handed alpha
Helix 80
AI8
G
67 96Right-handed alpha
Helix 81
AI9
E
9 34Right-handed alpha
Helix 82
AJ1
E
53 67Right-handed alpha
Helix 83
AJ2
E
95 112Right-handed alpha
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There are 5 sheets in PDB entry 7D3U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 62first strand
Strand 2
D
73 76anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
437 438first strand
Strand 2
D
519 520anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 58first strand
Strand 2
A
63 68anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
880 882first strand
Strand 2
A
885 887anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
105 106first strand
Strand 2
E
43 48parallel
Strand 3
E
85 90anti-parallel
Strand 4
E
70 76anti-parallel
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