Analysis of interatomic Contacts of Structural Units in PDB entry:
7D3V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D3V entry

There are 4 chains in PDB entry 7D3V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 199
B
 MET 200ASN 398
C
 A 399 T 408
D
 A 409 T 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7D3V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 22Right-handed alpha
Helix 2
AA2
A
70 83Right-handed alpha
Helix 3
AA3
A
103 117Right-handed alpha
Helix 4
AA4
A
134 147Right-handed alpha
Helix 5
AA5
A
154 166Right-handed alpha
Helix 6
AA6
A
178 196Right-handed alpha
Helix 7
AA7
B
213 221Right-handed alpha
Helix 8
AA8
B
269 282Right-handed alpha
Helix 9
AA9
B
304 316Right-handed alpha
Helix 10
AB1
B
332 346Right-handed alpha
Helix 11
AB2
B
353 365Right-handed alpha
Helix 12
AB3
B
377 398Right-handed alpha
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There are 3 sheets in PDB entry 7D3V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 56first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
90 98anti-parallel
Strand 4
A
120 128parallel
Strand 5
A
150 152parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 245first strand
Strand 2
B
231 240anti-parallel
Strand 3
B
252 255anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 245first strand
Strand 2
B
231 240anti-parallel
Strand 3
B
289 297anti-parallel
Strand 4
B
319 327parallel
Strand 5
B
349 350parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il