Analysis of interatomic Contacts of Structural Units in PDB entry:
7D3Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D3Y entry

There are 5 chains in PDB entry 7D3Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 391
B
 SER 6LEU 391
C
 ARG 248HIS 370
D
 MET 249HIS 365
E
 GLY 330GLU 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7D3Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
26 34Right-handed alpha
Helix 3
AA3
A
68 153Right-handed alpha
Helix 4
AA4
A
156 166Right-handed alpha
Helix 5
AA5
A
172 190Right-handed alpha
Helix 6
AA6
A
249 259Right-handed alpha
Helix 7
AA7
A
260 275Right-handed alpha
Helix 8
AA8
A
307 326Right-handed alpha
Helix 9
AA9
A
338 342Right-handed 310
Helix 10
AB1
A
344 363Right-handed alpha
Helix 11
AB2
A
377 389Right-handed alpha
Helix 12
AB3
B
7 13Right-handed alpha
Helix 13
AB4
B
26 34Right-handed alpha
Helix 14
AB5
B
68 153Right-handed alpha
Helix 15
AB6
B
156 166Right-handed alpha
Helix 16
AB7
B
172 190Right-handed alpha
Helix 17
AB8
B
249 260Right-handed alpha
Helix 18
AB9
B
260 275Right-handed alpha
Helix 19
AC1
B
307 326Right-handed alpha
Helix 20
AC2
B
344 363Right-handed alpha
Helix 21
AC3
B
377 390Right-handed alpha
Helix 22
AC4
C
252 267Right-handed alpha
Helix 23
AC5
C
273 281Right-handed alpha
Helix 24
AC6
C
287 303Right-handed alpha
Helix 25
AC7
C
304 308Right-handed 310
Helix 26
AC8
C
331 370Right-handed alpha
Helix 27
AC9
D
252 266Right-handed alpha
Helix 28
AD1
D
273 280Right-handed alpha
Helix 29
AD2
D
287 302Right-handed alpha
Helix 30
AD3
D
331 365Right-handed alpha
Helix 31
AD4
E
331 364Right-handed alpha
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There are 2 sheets in PDB entry 7D3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 215first strand
Strand 2
A
221 226anti-parallel
Strand 3
A
370 374parallel
Strand 4
A
330 333parallel
Strand 5
A
236 241parallel
Strand 6
A
294 299parallel
Strand 7
A
282 286anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 215first strand
Strand 2
B
221 226anti-parallel
Strand 3
B
370 374parallel
Strand 4
B
330 333parallel
Strand 5
B
236 241parallel
Strand 6
B
294 299parallel
Strand 7
B
282 286anti-parallel
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