Analysis of interatomic Contacts of Structural Units in PDB entry:
7D41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D41 entry

There are 3 chains in PDB entry 7D41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 27ARG 392
A
 PRO 26GLY 174
A
 ALA 176ARG 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 7D41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
49 58Right-handed alpha
Helix 2
AA2
B
62 76Right-handed alpha
Helix 3
AA3
B
89 91Right-handed 310
Helix 4
AA4
B
92 98Right-handed alpha
Helix 5
AA5
B
101 126Right-handed alpha
Helix 6
AA6
B
131 133Right-handed 310
Helix 7
AA7
B
150 160Right-handed alpha
Helix 8
AA8
B
173 175Right-handed 310
Helix 9
AA9
B
176 192Right-handed alpha
Helix 10
AB1
B
206 209Right-handed 310
Helix 11
AB2
B
214 224Right-handed alpha
Helix 12
AB3
B
280 300Right-handed alpha
Helix 13
AB4
B
303 307Right-handed 310
Helix 14
AB5
B
316 328Right-handed alpha
Helix 15
AB6
B
330 333Right-handed 310
Helix 16
AB7
B
334 345Right-handed alpha
Helix 17
AB8
B
347 349Right-handed 310
Helix 18
AB9
B
350 362Right-handed alpha
Helix 19
AC1
A
49 59Right-handed alpha
Helix 20
AC2
A
62 76Right-handed alpha
Helix 21
AC3
A
89 98Right-handed alpha
Helix 22
AC4
A
101 126Right-handed alpha
Helix 23
AC5
A
131 133Right-handed 310
Helix 24
AC6
A
150 160Right-handed alpha
Helix 25
AC7
A
176 192Right-handed alpha
Helix 26
AC8
A
206 209Right-handed 310
Helix 27
AC9
A
215 224Right-handed alpha
Helix 28
AD1
A
280 300Right-handed alpha
Helix 29
AD2
A
303 307Right-handed 310
Helix 30
AD3
A
316 328Right-handed alpha
Helix 31
AD4
A
330 333Right-handed 310
Helix 32
AD5
A
334 345Right-handed alpha
Helix 33
AD6
A
347 349Right-handed 310
Helix 34
AD7
A
350 362Right-handed alpha
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There are 6 sheets in PDB entry 7D41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 171first strand
Strand 2
B
135 142parallel
Strand 3
B
196 204parallel
Strand 4
B
226 237anti-parallel
Strand 5
B
31 41anti-parallel
Strand 6
B
247 253anti-parallel
Strand 7
B
382 391anti-parallel
Strand 8
B
369 378anti-parallel
Strand 9
B
309 312parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
80 82anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
A
264 269anti-parallel
Strand 3
A
272 277anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 277first strand
Strand 2
B
264 269anti-parallel
Strand 3
A
147 148anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 171first strand
Strand 2
A
135 142parallel
Strand 3
A
196 204parallel
Strand 4
A
226 237anti-parallel
Strand 5
A
31 41anti-parallel
Strand 6
A
247 256anti-parallel
Strand 7
A
382 391anti-parallel
Strand 8
A
369 378anti-parallel
Strand 9
A
309 312parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
80 82anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il