Analysis of interatomic Contacts of Structural Units in PDB entry:
7D43

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D43 entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 16 chains in PDB entry 7D43 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 305
B	MET 1	LEU 305
C	GLY 8	LEU 351
D	GLY 8	LEU 351
E	MET 1	VAL 444
F	MET 1	VAL 444
G	GLN 166	VAL 518
H	GLN 166	VAL 518
I	PRO 41	ASP 467
J	PRO 40	ASP 468
K	CYS 5	LEU 50
K	ARG 52	VAL 271
L	CYS 5	LEU 50
L	ARG 52	ASN 180
M	ASP 173	ARG 188
P	ALA 40	ARG 460

There are147 helices in PDB entry 7D43. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	17	Right-handed alpha
Helix 2	AA2	A	21	36	Right-handed alpha
Helix 3	AA3	A	42	57	Right-handed alpha
Helix 4	AA4	A	62	77	Right-handed alpha
Helix 5	AA5	A	87	116	Right-handed alpha
Helix 6	AA6	A	117	119	Right-handed 310
Helix 7	AA7	A	132	144	Right-handed alpha
Helix 8	AA8	A	159	170	Right-handed alpha
Helix 9	AA9	A	179	189	Right-handed 310
Helix 10	AB1	A	211	220	Right-handed alpha
Helix 11	AB2	A	231	233	Right-handed 310
Helix 12	AB3	A	247	252	Right-handed alpha
Helix 13	AB4	A	293	305	Right-handed alpha
Helix 14	AB5	B	2	16	Right-handed alpha
Helix 15	AB6	B	21	36	Right-handed alpha
Helix 16	AB7	B	42	60	Right-handed alpha
Helix 17	AB8	B	62	75	Right-handed alpha
Helix 18	AB9	B	87	116	Right-handed alpha
Helix 19	AC1	B	131	144	Right-handed alpha
Helix 20	AC2	B	160	169	Right-handed alpha
Helix 21	AC3	B	170	172	Right-handed 310
Helix 22	AC4	B	179	181	Right-handed 310
Helix 23	AC5	B	182	187	Right-handed alpha
Helix 24	AC6	B	211	222	Right-handed alpha
Helix 25	AC7	B	231	235	Right-handed 310
Helix 26	AC8	B	293	305	Right-handed alpha
Helix 27	AC9	C	9	25	Right-handed alpha
Helix 28	AD1	C	30	48	Right-handed alpha
Helix 29	AD2	C	53	72	Right-handed alpha
Helix 30	AD3	C	76	96	Right-handed alpha
Helix 31	AD4	C	128	159	Right-handed alpha
Helix 32	AD5	C	171	182	Right-handed alpha
Helix 33	AD6	C	201	210	Right-handed alpha
Helix 34	AD7	C	218	220	Right-handed 310
Helix 35	AD8	C	221	226	Right-handed alpha
Helix 36	AD9	C	227	229	Right-handed 310
Helix 37	AE1	C	251	262	Right-handed alpha
Helix 38	AE2	C	270	274	Right-handed 310
Helix 39	AE3	C	301	304	Right-handed 310
Helix 40	AE4	C	317	321	Right-handed 310
Helix 41	AE5	C	334	343	Right-handed alpha
Helix 42	AE6	C	345	349	Right-handed 310
Helix 43	AE7	D	9	24	Right-handed alpha
Helix 44	AE8	D	30	49	Right-handed alpha
Helix 45	AE9	D	53	72	Right-handed alpha
Helix 46	AF1	D	75	98	Right-handed alpha
Helix 47	AF2	D	127	146	Right-handed alpha
Helix 48	AF3	D	146	155	Right-handed alpha
Helix 49	AF4	D	156	158	Right-handed 310
Helix 50	AF5	D	171	182	Right-handed alpha
Helix 51	AF6	D	199	211	Right-handed alpha
Helix 52	AF7	D	221	226	Right-handed alpha
Helix 53	AF8	D	227	229	Right-handed 310
Helix 54	AF9	D	250	260	Right-handed alpha
Helix 55	AG1	D	296	300	Right-handed 310
Helix 56	AG2	D	317	321	Right-handed 310
Helix 57	AG3	D	332	343	Right-handed alpha
Helix 58	AG4	D	346	350	Right-handed 310
Helix 59	AG5	E	36	45	Right-handed alpha
Helix 60	AG6	E	62	68	Right-handed alpha
Helix 61	AG7	E	85	94	Right-handed alpha
Helix 62	AG8	E	114	122	Right-handed alpha
Helix 63	AG9	E	172	176	Right-handed 310
Helix 64	AH1	E	183	188	Right-handed alpha
Helix 65	AH2	E	208	217	Right-handed alpha
Helix 66	AH3	E	223	236	Right-handed alpha
Helix 67	AH4	E	281	292	Right-handed alpha
Helix 68	AH5	F	37	46	Right-handed alpha
Helix 69	AH6	F	64	69	Right-handed alpha
Helix 70	AH7	F	85	94	Right-handed alpha
Helix 71	AH8	F	95	97	Right-handed 310
Helix 72	AH9	F	114	124	Right-handed alpha
Helix 73	AI1	F	183	190	Right-handed alpha
Helix 74	AI2	F	208	218	Right-handed alpha
Helix 75	AI3	F	227	235	Right-handed alpha
Helix 76	AI4	F	280	292	Right-handed alpha
Helix 77	AI5	G	177	182	Right-handed 310
Helix 78	AI6	G	191	195	Right-handed 310
Helix 79	AI7	G	204	216	Right-handed alpha
Helix 80	AI8	G	221	240	Right-handed alpha
Helix 81	AI9	G	247	267	Right-handed alpha
Helix 82	AJ1	G	270	285	Right-handed alpha
Helix 83	AJ2	G	292	312	Right-handed alpha
Helix 84	AJ3	G	314	325	Right-handed alpha
Helix 85	AJ4	G	339	352	Right-handed alpha
Helix 86	AJ5	G	368	378	Right-handed alpha
Helix 87	AJ6	G	390	395	Right-handed alpha
Helix 88	AJ7	G	420	431	Right-handed alpha
Helix 89	AJ8	G	439	443	Right-handed 310
Helix 90	AJ9	G	459	464	Right-handed 310
Helix 91	AK1	G	511	518	Right-handed alpha
Helix 92	AK2	H	177	181	Right-handed 310
Helix 93	AK3	H	191	195	Right-handed 310
Helix 94	AK4	H	204	216	Right-handed alpha
Helix 95	AK5	H	221	240	Right-handed alpha
Helix 96	AK6	H	247	267	Right-handed alpha
Helix 97	AK7	H	270	286	Right-handed alpha
Helix 98	AK8	H	292	313	Right-handed alpha
Helix 99	AK9	H	314	324	Right-handed alpha
Helix 100	AL1	H	339	351	Right-handed alpha
Helix 101	AL2	H	369	378	Right-handed alpha
Helix 102	AL3	H	390	395	Right-handed alpha
Helix 103	AL4	H	420	430	Right-handed alpha
Helix 104	AL5	H	439	443	Right-handed 310
Helix 105	AL6	H	511	518	Right-handed alpha
Helix 106	AL7	I	74	86	Right-handed alpha
Helix 107	AL8	I	98	107	Right-handed alpha
Helix 108	AL9	I	130	141	Right-handed alpha
Helix 109	AM1	I	161	174	Right-handed alpha
Helix 110	AM2	I	228	234	Right-handed alpha
Helix 111	AM3	I	254	262	Right-handed alpha
Helix 112	AM4	I	268	279	Right-handed alpha
Helix 113	AM5	I	302	314	Right-handed alpha
Helix 114	AM6	I	322	326	Right-handed 310
Helix 115	AM7	I	330	334	Right-handed 310
Helix 116	AM8	I	338	340	Right-handed 310
Helix 117	AM9	J	58	63	Right-handed alpha
Helix 118	AN1	J	75	86	Right-handed alpha
Helix 119	AN2	J	98	107	Right-handed alpha
Helix 120	AN3	J	108	113	Right-handed 310
Helix 121	AN4	J	130	141	Right-handed alpha
Helix 122	AN5	J	161	175	Right-handed alpha
Helix 123	AN6	J	228	234	Right-handed alpha
Helix 124	AN7	J	253	262	Right-handed alpha
Helix 125	AN8	J	268	278	Right-handed alpha
Helix 126	AN9	J	302	314	Right-handed alpha
Helix 127	AO1	J	338	342	Right-handed 310
Helix 128	AO2	K	76	80	Right-handed 310
Helix 129	AO3	K	90	118	Right-handed alpha
Helix 130	AO4	K	123	141	Right-handed alpha
Helix 131	AO5	K	145	158	Right-handed alpha
Helix 132	AO6	K	158	163	Right-handed alpha
Helix 133	AO7	K	168	180	Right-handed alpha
Helix 134	AO8	K	202	223	Right-handed alpha
Helix 135	AO9	K	245	249	Right-handed 310
Helix 136	AP1	K	253	260	Right-handed 310
Helix 137	AP2	K	261	265	Right-handed 310
Helix 138	AP3	L	90	118	Right-handed alpha
Helix 139	AP4	L	123	140	Right-handed alpha
Helix 140	AP5	L	145	155	Right-handed alpha
Helix 141	AP6	L	159	165	Right-handed 310
Helix 142	AP7	L	168	180	Right-handed alpha
Helix 143	AP8	M	175	183	Right-handed alpha
Helix 144	AP9	P	143	148	Right-handed alpha
Helix 145	AQ1	P	149	152	Right-handed 310
Helix 146	AQ2	P	204	209	Right-handed alpha
Helix 147	AQ3	P	233	237	Right-handed 310

There are 47 sheets in PDB entry 7D43. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	150	153	parallel
Strand 3	A	175	178	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	196	first strand
Strand 2	A	226	229	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	201	first strand
Strand 2	A	235	236	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	209	first strand
Strand 2	A	273	276	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	126	first strand
Strand 2	B	149	152	parallel
Strand 3	B	175	177	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	273	275	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	188	191	parallel
Strand 3	C	214	216	parallel
Strand 4	G	482	483	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	234	first strand
Strand 2	C	265	267	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	248	first strand
Strand 2	C	313	315	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	308	first strand
Strand 2	G	383	387	parallel
Strand 3	G	359	362	parallel
Strand 4	G	334	335	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	218	first strand
Strand 2	D	188	193	parallel
Strand 3	D	164	166	parallel
Strand 4	D	231	234	parallel
Strand 5	D	266	267	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	239	first strand
Strand 2	D	245	248	anti-parallel
Strand 3	D	313	315	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	307	first strand
Strand 2	H	383	387	parallel
Strand 3	H	358	362	parallel
Strand 4	H	333	335	parallel
Strand 5	H	400	402	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	54	first strand
Strand 2	E	76	78	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	133	first strand
Strand 2	E	264	268	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	169	first strand
Strand 2	E	158	161	anti-parallel
Strand 3	E	193	196	anti-parallel
Strand 4	J	238	241	anti-parallel
Strand 5	J	201	206	anti-parallel
Strand 6	J	211	217	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	379	381	first strand
Strand 2	E	396	398	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	413	414	first strand
Strand 2	E	430	431	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	54	first strand
Strand 2	F	76	78	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	109	first strand
Strand 2	F	272	273	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	201	first strand
Strand 2	F	132	133	anti-parallel
Strand 3	F	267	268	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	158	161	anti-parallel
Strand 3	F	192	196	anti-parallel
Strand 4	I	238	241	anti-parallel
Strand 5	I	202	206	anti-parallel
Strand 6	I	212	216	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	391	392	first strand
Strand 2	F	408	409	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	396	397	first strand
Strand 2	F	413	414	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	425	426	first strand
Strand 2	F	443	444	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	414	417	first strand
Strand 2	G	489	492	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	435	437	first strand
Strand 2	G	499	502	parallel
Strand 3	G	505	508	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	407	408	first strand
Strand 2	H	414	417	anti-parallel
Strand 3	H	489	492	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	435	437	first strand
Strand 2	H	499	502	parallel
Strand 3	H	505	508	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	46	first strand
Strand 2	I	90	92	parallel
Strand 3	I	119	120	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	155	156	first strand
Strand 2	I	298	299	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	184	186	first strand
Strand 2	I	290	292	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	342	344	first strand
Strand 2	I	360	362	parallel
Strand 3	I	378	379	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	391	392	first strand
Strand 2	I	408	409	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	401	402	first strand
Strand 2	I	418	419	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	44	45	first strand
Strand 2	J	90	91	parallel
Strand 3	J	119	120	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	94	95	first strand
Strand 2	J	123	124	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	155	157	first strand
Strand 2	J	297	299	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	182	186	first strand
Strand 2	J	288	292	parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	373	375	first strand
Strand 2	J	390	392	parallel
Strand 3	J	408	409	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	384	385	first strand
Strand 2	J	401	402	parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	41	46	first strand
Strand 2	K	30	35	anti-parallel
Strand 3	K	18	22	anti-parallel
Strand 4	K	68	72	anti-parallel
Strand 5	K	84	85	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	192	193	first strand
Strand 2	K	237	238	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	25	first strand
Strand 2	L	32	35	anti-parallel
Strand 3	L	41	45	anti-parallel
Strand 4	L	83	85	parallel
Strand 5	L	68	72	anti-parallel
Strand 6	L	19	25	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	279	281	first strand
Strand 2	P	337	339	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	371	373	first strand
Strand 2	P	425	427	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	405	408	first strand
Strand 2	P	411	414	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D43

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D43