Analysis of interatomic Contacts of Structural Units in PDB entry:
7D45

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D45 entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 7D45 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 305
B	MET 1	LEU 305
C	GLY 8	LEU 351
D	GLY 8	LEU 351
E	MET 1	VAL 444
F	MET 1	VAL 444
G	GLN 166	VAL 518
H	GLN 166	VAL 518
I	PRO 41	ASP 467
J	PRO 40	ASP 468
K	CYS 5	LEU 50
K	ARG 52	ASN 180

There are126 helices in PDB entry 7D45. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	17	Right-handed alpha
Helix 2	AA2	A	21	36	Right-handed alpha
Helix 3	AA3	A	42	58	Right-handed alpha
Helix 4	AA4	A	62	76	Right-handed alpha
Helix 5	AA5	A	87	116	Right-handed alpha
Helix 6	AA6	A	131	143	Right-handed alpha
Helix 7	AA7	A	159	170	Right-handed alpha
Helix 8	AA8	A	179	184	Right-handed 310
Helix 9	AA9	A	185	190	Right-handed 310
Helix 10	AB1	A	211	222	Right-handed alpha
Helix 11	AB2	A	247	252	Right-handed alpha
Helix 12	AB3	A	294	305	Right-handed alpha
Helix 13	AB4	B	2	17	Right-handed alpha
Helix 14	AB5	B	21	36	Right-handed alpha
Helix 15	AB6	B	45	60	Right-handed alpha
Helix 16	AB7	B	62	77	Right-handed alpha
Helix 17	AB8	B	86	116	Right-handed alpha
Helix 18	AB9	B	131	144	Right-handed alpha
Helix 19	AC1	B	160	170	Right-handed alpha
Helix 20	AC2	B	182	187	Right-handed alpha
Helix 21	AC3	B	211	222	Right-handed alpha
Helix 22	AC4	B	242	246	Right-handed 310
Helix 23	AC5	B	293	304	Right-handed alpha
Helix 24	AC6	C	9	24	Right-handed alpha
Helix 25	AC7	C	30	49	Right-handed alpha
Helix 26	AC8	C	53	72	Right-handed alpha
Helix 27	AC9	C	76	96	Right-handed alpha
Helix 28	AD1	C	128	146	Right-handed alpha
Helix 29	AD2	C	146	159	Right-handed alpha
Helix 30	AD3	C	171	181	Right-handed alpha
Helix 31	AD4	C	198	209	Right-handed alpha
Helix 32	AD5	C	221	226	Right-handed alpha
Helix 33	AD6	C	251	262	Right-handed alpha
Helix 34	AD7	C	300	304	Right-handed 310
Helix 35	AD8	C	335	344	Right-handed alpha
Helix 36	AD9	C	346	350	Right-handed 310
Helix 37	AE1	D	9	25	Right-handed alpha
Helix 38	AE2	D	30	46	Right-handed alpha
Helix 39	AE3	D	54	72	Right-handed alpha
Helix 40	AE4	D	75	97	Right-handed alpha
Helix 41	AE5	D	127	146	Right-handed alpha
Helix 42	AE6	D	146	156	Right-handed alpha
Helix 43	AE7	D	171	182	Right-handed alpha
Helix 44	AE8	D	199	209	Right-handed alpha
Helix 45	AE9	D	220	222	Right-handed 310
Helix 46	AF1	D	250	261	Right-handed alpha
Helix 47	AF2	D	290	294	Right-handed 310
Helix 48	AF3	D	296	304	Right-handed 310
Helix 49	AF4	D	332	344	Right-handed alpha
Helix 50	AF5	E	36	45	Right-handed alpha
Helix 51	AF6	E	62	67	Right-handed alpha
Helix 52	AF7	E	85	94	Right-handed alpha
Helix 53	AF8	E	95	97	Right-handed 310
Helix 54	AF9	E	114	124	Right-handed alpha
Helix 55	AG1	E	183	190	Right-handed alpha
Helix 56	AG2	E	208	218	Right-handed alpha
Helix 57	AG3	E	223	228	Right-handed alpha
Helix 58	AG4	E	228	235	Right-handed alpha
Helix 59	AG5	E	236	238	Right-handed 310
Helix 60	AG6	E	279	293	Right-handed alpha
Helix 61	AG7	F	36	46	Right-handed alpha
Helix 62	AG8	F	63	67	Right-handed 310
Helix 63	AG9	F	85	94	Right-handed alpha
Helix 64	AH1	F	95	97	Right-handed 310
Helix 65	AH2	F	113	125	Right-handed alpha
Helix 66	AH3	F	184	190	Right-handed alpha
Helix 67	AH4	F	208	218	Right-handed alpha
Helix 68	AH5	F	223	228	Right-handed alpha
Helix 69	AH6	F	228	236	Right-handed alpha
Helix 70	AH7	F	277	292	Right-handed alpha
Helix 71	AH8	G	177	181	Right-handed 310
Helix 72	AH9	G	191	196	Right-handed 310
Helix 73	AI1	G	204	216	Right-handed alpha
Helix 74	AI2	G	221	239	Right-handed alpha
Helix 75	AI3	G	247	267	Right-handed alpha
Helix 76	AI4	G	270	286	Right-handed alpha
Helix 77	AI5	G	292	312	Right-handed alpha
Helix 78	AI6	G	313	325	Right-handed alpha
Helix 79	AI7	G	339	351	Right-handed alpha
Helix 80	AI8	G	369	378	Right-handed alpha
Helix 81	AI9	G	390	395	Right-handed alpha
Helix 82	AJ1	G	419	431	Right-handed alpha
Helix 83	AJ2	G	459	463	Right-handed 310
Helix 84	AJ3	G	512	517	Right-handed alpha
Helix 85	AJ4	H	177	181	Right-handed 310
Helix 86	AJ5	H	191	196	Right-handed 310
Helix 87	AJ6	H	204	216	Right-handed alpha
Helix 88	AJ7	H	221	239	Right-handed alpha
Helix 89	AJ8	H	247	267	Right-handed alpha
Helix 90	AJ9	H	270	285	Right-handed alpha
Helix 91	AK1	H	292	312	Right-handed alpha
Helix 92	AK2	H	313	324	Right-handed alpha
Helix 93	AK3	H	340	352	Right-handed alpha
Helix 94	AK4	H	368	378	Right-handed alpha
Helix 95	AK5	H	390	395	Right-handed alpha
Helix 96	AK6	H	419	430	Right-handed alpha
Helix 97	AK7	H	459	463	Right-handed 310
Helix 98	AK8	H	508	512	Right-handed 310
Helix 99	AK9	I	64	68	Right-handed 310
Helix 100	AL1	I	74	86	Right-handed alpha
Helix 101	AL2	I	98	108	Right-handed alpha
Helix 102	AL3	I	131	142	Right-handed alpha
Helix 103	AL4	I	161	176	Right-handed alpha
Helix 104	AL5	I	196	199	Right-handed 310
Helix 105	AL6	I	227	232	Right-handed 310
Helix 106	AL7	I	253	263	Right-handed alpha
Helix 107	AL8	I	269	279	Right-handed alpha
Helix 108	AL9	I	302	315	Right-handed alpha
Helix 109	AM1	I	338	342	Right-handed 310
Helix 110	AM2	J	58	62	Right-handed 310
Helix 111	AM3	J	64	68	Right-handed 310
Helix 112	AM4	J	74	86	Right-handed alpha
Helix 113	AM5	J	98	108	Right-handed alpha
Helix 114	AM6	J	130	142	Right-handed alpha
Helix 115	AM7	J	161	176	Right-handed alpha
Helix 116	AM8	J	228	235	Right-handed alpha
Helix 117	AM9	J	253	263	Right-handed alpha
Helix 118	AN1	J	268	277	Right-handed alpha
Helix 119	AN2	J	302	314	Right-handed alpha
Helix 120	AN3	J	338	342	Right-handed 310
Helix 121	AN4	K	52	56	Right-handed 310
Helix 122	AN5	K	60	65	Right-handed alpha
Helix 123	AN6	K	90	118	Right-handed alpha
Helix 124	AN7	K	122	139	Right-handed alpha
Helix 125	AN8	K	146	154	Right-handed alpha
Helix 126	AN9	K	169	180	Right-handed alpha

There are 39 sheets in PDB entry 7D45. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	149	152	parallel
Strand 3	A	124	127	parallel
Strand 4	A	192	196	parallel
Strand 5	A	226	229	parallel
Strand 6	A	283	286	parallel
Strand 7	A	289	291	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	274	276	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	127	first strand
Strand 2	B	149	152	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	226	227	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	273	275	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	286	first strand
Strand 2	B	289	291	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	331	first strand
Strand 2	C	321	326	anti-parallel
Strand 3	C	265	268	parallel
Strand 4	C	231	234	parallel
Strand 5	C	164	168	parallel
Strand 6	C	188	193	parallel
Strand 7	C	214	218	parallel
Strand 8	G	482	485	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	239	first strand
Strand 2	C	245	248	anti-parallel
Strand 3	C	313	315	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	218	first strand
Strand 2	D	189	193	parallel
Strand 3	D	165	168	parallel
Strand 4	D	231	234	parallel
Strand 5	D	265	267	parallel
Strand 6	D	323	326	parallel
Strand 7	D	329	331	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	239	first strand
Strand 2	D	245	248	anti-parallel
Strand 3	D	313	316	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	78	79	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	200	206	anti-parallel
Strand 3	E	129	133	anti-parallel
Strand 4	E	264	268	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	171	first strand
Strand 2	E	157	161	anti-parallel
Strand 3	E	193	196	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	362	364	first strand
Strand 2	E	379	381	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	375	first strand
Strand 2	E	391	392	parallel
Strand 3	E	408	409	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	79	first strand
Strand 2	F	52	55	parallel
Strand 3	F	5	8	parallel
Strand 4	F	101	105	parallel
Strand 5	F	200	207	anti-parallel
Strand 6	F	128	133	anti-parallel
Strand 7	F	263	268	parallel

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There are 13 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	171	first strand
Strand 2	F	157	160	anti-parallel
Strand 3	F	192	196	anti-parallel
Strand 4	I	238	241	anti-parallel
Strand 5	I	201	206	anti-parallel
Strand 6	I	211	217	anti-parallel
Strand 7	I	287	292	anti-parallel
Strand 8	I	181	187	parallel
Strand 9	I	250	252	anti-parallel
Strand 10	I	149	152	anti-parallel
Strand 11	I	44	48	parallel
Strand 12	I	90	95	parallel
Strand 13	I	123	124	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	119	120	first strand
Strand 2	I	90	95	parallel
Strand 3	I	44	48	parallel
Strand 4	I	149	152	parallel
Strand 5	I	250	252	anti-parallel
Strand 6	I	181	187	anti-parallel
Strand 7	I	244	246	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	182	183	first strand
Strand 2	I	223	224	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	352	354	first strand
Strand 2	F	369	371	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	374	375	first strand
Strand 2	F	391	392	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	332	334	first strand
Strand 2	G	357	362	parallel
Strand 3	G	385	387	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	414	416	first strand
Strand 2	G	490	492	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	436	437	first strand
Strand 2	G	500	502	parallel
Strand 3	G	505	507	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	466	467	first strand
Strand 2	G	470	471	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	386	387	first strand
Strand 2	H	358	362	parallel
Strand 3	H	332	336	parallel
Strand 4	H	398	401	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	407	408	first strand
Strand 2	H	414	416	anti-parallel
Strand 3	H	490	492	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	436	437	first strand
Strand 2	H	500	502	parallel
Strand 3	H	505	507	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	155	157	first strand
Strand 2	I	297	299	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	355	356	first strand
Strand 2	I	373	375	parallel
Strand 3	I	390	392	parallel
Strand 4	I	407	409	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	423	424	first strand
Strand 2	I	441	442	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	94	95	first strand
Strand 2	J	123	124	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	155	157	first strand
Strand 2	J	297	299	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	186	187	first strand
Strand 2	J	244	245	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	212	217	first strand
Strand 2	J	201	206	anti-parallel
Strand 3	J	238	241	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	355	356	first strand
Strand 2	J	373	375	parallel
Strand 3	J	390	392	parallel
Strand 4	J	407	409	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	367	368	first strand
Strand 2	J	384	385	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	423	424	first strand
Strand 2	J	441	442	parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	41	46	first strand
Strand 2	K	30	35	anti-parallel
Strand 3	K	18	25	anti-parallel
Strand 4	K	68	76	anti-parallel
Strand 5	K	81	85	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D45

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D45