Analysis of interatomic Contacts of Structural Units in PDB entry:
7D46

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D46 entry

There are 10 chains in PDB entry 7D46 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 305
B	MET 1	LEU 305
C	GLY 8	LEU 351
D	GLY 8	LEU 351
E	MET 1	VAL 444
F	MET 1	VAL 444
G	GLN 166	VAL 518
H	GLN 166	VAL 518
I	PRO 41	ASP 467
J	PRO 40	ASP 468

There are130 helices in PDB entry 7D46. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	15	Right-handed alpha
Helix 2	AA2	A	21	36	Right-handed alpha
Helix 3	AA3	A	45	57	Right-handed alpha
Helix 4	AA4	A	62	75	Right-handed alpha
Helix 5	AA5	A	87	116	Right-handed alpha
Helix 6	AA6	A	131	144	Right-handed alpha
Helix 7	AA7	A	159	170	Right-handed alpha
Helix 8	AA8	A	179	181	Right-handed 310
Helix 9	AA9	A	182	187	Right-handed alpha
Helix 10	AB1	A	188	190	Right-handed 310
Helix 11	AB2	A	212	222	Right-handed alpha
Helix 12	AB3	A	231	235	Right-handed 310
Helix 13	AB4	A	242	246	Right-handed 310
Helix 14	AB5	A	292	294	Right-handed 310
Helix 15	AB6	A	295	305	Right-handed alpha
Helix 16	AB7	B	2	16	Right-handed alpha
Helix 17	AB8	B	21	36	Right-handed alpha
Helix 18	AB9	B	42	60	Right-handed alpha
Helix 19	AC1	B	62	77	Right-handed alpha
Helix 20	AC2	B	87	116	Right-handed alpha
Helix 21	AC3	B	131	144	Right-handed alpha
Helix 22	AC4	B	160	170	Right-handed alpha
Helix 23	AC5	B	179	181	Right-handed 310
Helix 24	AC6	B	182	187	Right-handed alpha
Helix 25	AC7	B	188	190	Right-handed 310
Helix 26	AC8	B	212	222	Right-handed alpha
Helix 27	AC9	B	242	246	Right-handed 310
Helix 28	AD1	B	292	305	Right-handed alpha
Helix 29	AD2	C	9	25	Right-handed alpha
Helix 30	AD3	C	30	48	Right-handed alpha
Helix 31	AD4	C	53	72	Right-handed alpha
Helix 32	AD5	C	76	95	Right-handed alpha
Helix 33	AD6	C	129	146	Right-handed alpha
Helix 34	AD7	C	147	156	Right-handed alpha
Helix 35	AD8	C	171	181	Right-handed alpha
Helix 36	AD9	C	199	209	Right-handed alpha
Helix 37	AE1	C	251	261	Right-handed alpha
Helix 38	AE2	C	270	274	Right-handed 310
Helix 39	AE3	C	300	304	Right-handed 310
Helix 40	AE4	C	335	344	Right-handed alpha
Helix 41	AE5	C	345	349	Right-handed 310
Helix 42	AE6	D	9	24	Right-handed alpha
Helix 43	AE7	D	30	48	Right-handed alpha
Helix 44	AE8	D	53	71	Right-handed alpha
Helix 45	AE9	D	76	96	Right-handed alpha
Helix 46	AF1	D	127	146	Right-handed alpha
Helix 47	AF2	D	147	156	Right-handed alpha
Helix 48	AF3	D	157	159	Right-handed 310
Helix 49	AF4	D	171	181	Right-handed alpha
Helix 50	AF5	D	199	209	Right-handed alpha
Helix 51	AF6	D	221	226	Right-handed alpha
Helix 52	AF7	D	227	229	Right-handed 310
Helix 53	AF8	D	250	262	Right-handed alpha
Helix 54	AF9	D	296	305	Right-handed 310
Helix 55	AG1	D	317	321	Right-handed 310
Helix 56	AG2	D	332	334	Right-handed 310
Helix 57	AG3	D	335	344	Right-handed alpha
Helix 58	AG4	E	36	46	Right-handed alpha
Helix 59	AG5	E	62	68	Right-handed alpha
Helix 60	AG6	E	86	94	Right-handed alpha
Helix 61	AG7	E	95	97	Right-handed 310
Helix 62	AG8	E	116	124	Right-handed alpha
Helix 63	AG9	E	183	190	Right-handed alpha
Helix 64	AH1	E	208	218	Right-handed alpha
Helix 65	AH2	E	223	228	Right-handed alpha
Helix 66	AH3	E	228	235	Right-handed alpha
Helix 67	AH4	E	277	292	Right-handed alpha
Helix 68	AH5	F	36	46	Right-handed alpha
Helix 69	AH6	F	63	68	Right-handed alpha
Helix 70	AH7	F	86	94	Right-handed alpha
Helix 71	AH8	F	95	97	Right-handed 310
Helix 72	AH9	F	114	124	Right-handed alpha
Helix 73	AI1	F	184	190	Right-handed alpha
Helix 74	AI2	F	208	218	Right-handed alpha
Helix 75	AI3	F	223	228	Right-handed alpha
Helix 76	AI4	F	228	234	Right-handed alpha
Helix 77	AI5	F	277	292	Right-handed alpha
Helix 78	AI6	G	177	181	Right-handed 310
Helix 79	AI7	G	191	196	Right-handed 310
Helix 80	AI8	G	204	216	Right-handed alpha
Helix 81	AI9	G	222	239	Right-handed alpha
Helix 82	AJ1	G	247	267	Right-handed alpha
Helix 83	AJ2	G	270	284	Right-handed alpha
Helix 84	AJ3	G	292	311	Right-handed alpha
Helix 85	AJ4	G	313	324	Right-handed alpha
Helix 86	AJ5	G	325	327	Right-handed 310
Helix 87	AJ6	G	339	350	Right-handed alpha
Helix 88	AJ7	G	369	377	Right-handed alpha
Helix 89	AJ8	G	390	395	Right-handed alpha
Helix 90	AJ9	G	418	430	Right-handed alpha
Helix 91	AK1	G	459	463	Right-handed 310
Helix 92	AK2	G	508	510	Right-handed 310
Helix 93	AK3	G	511	516	Right-handed alpha
Helix 94	AK4	H	177	181	Right-handed 310
Helix 95	AK5	H	204	216	Right-handed alpha
Helix 96	AK6	H	221	239	Right-handed alpha
Helix 97	AK7	H	247	267	Right-handed alpha
Helix 98	AK8	H	270	284	Right-handed alpha
Helix 99	AK9	H	285	287	Right-handed 310
Helix 100	AL1	H	292	311	Right-handed alpha
Helix 101	AL2	H	314	324	Right-handed alpha
Helix 102	AL3	H	339	351	Right-handed alpha
Helix 103	AL4	H	369	377	Right-handed alpha
Helix 104	AL5	H	390	395	Right-handed alpha
Helix 105	AL6	H	419	430	Right-handed alpha
Helix 106	AL7	H	439	443	Right-handed 310
Helix 107	AL8	H	459	463	Right-handed 310
Helix 108	AL9	H	508	512	Right-handed 310
Helix 109	AM1	I	58	62	Right-handed 310
Helix 110	AM2	I	74	87	Right-handed alpha
Helix 111	AM3	I	98	107	Right-handed alpha
Helix 112	AM4	I	130	141	Right-handed alpha
Helix 113	AM5	I	161	175	Right-handed alpha
Helix 114	AM6	I	228	234	Right-handed alpha
Helix 115	AM7	I	254	262	Right-handed alpha
Helix 116	AM8	I	268	279	Right-handed alpha
Helix 117	AM9	I	302	314	Right-handed alpha
Helix 118	AN1	I	338	342	Right-handed 310
Helix 119	AN2	J	58	63	Right-handed alpha
Helix 120	AN3	J	64	68	Right-handed 310
Helix 121	AN4	J	74	87	Right-handed alpha
Helix 122	AN5	J	98	108	Right-handed alpha
Helix 123	AN6	J	130	141	Right-handed alpha
Helix 124	AN7	J	161	175	Right-handed alpha
Helix 125	AN8	J	227	232	Right-handed 310
Helix 126	AN9	J	253	262	Right-handed alpha
Helix 127	AO1	J	268	279	Right-handed alpha
Helix 128	AO2	J	302	315	Right-handed alpha
Helix 129	AO3	J	322	326	Right-handed 310
Helix 130	AO4	J	338	342	Right-handed 310

There are 37 sheets in PDB entry 7D46. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	149	150	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	227	229	parallel
Strand 3	A	283	286	parallel
Strand 4	A	289	291	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	273	274	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	127	first strand
Strand 2	B	150	153	parallel
Strand 3	B	175	178	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	274	275	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	189	first strand
Strand 2	C	164	166	parallel
Strand 3	C	231	232	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	248	first strand
Strand 2	C	313	314	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	268	first strand
Strand 2	C	323	325	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	193	first strand
Strand 2	D	214	218	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	239	first strand
Strand 2	D	245	247	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	324	326	first strand
Strand 2	D	329	331	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	52	first strand
Strand 2	E	75	76	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	207	first strand
Strand 2	E	128	133	anti-parallel
Strand 3	E	264	268	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	171	first strand
Strand 2	E	157	160	anti-parallel
Strand 3	E	194	196	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	408	409	first strand
Strand 2	E	425	426	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	8	first strand
Strand 2	F	101	105	parallel
Strand 3	F	200	207	anti-parallel
Strand 4	F	128	133	anti-parallel
Strand 5	F	264	265	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	54	first strand
Strand 2	F	76	78	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	170	first strand
Strand 2	F	158	161	anti-parallel
Strand 3	F	192	196	anti-parallel
Strand 4	I	238	241	anti-parallel
Strand 5	I	202	206	anti-parallel
Strand 6	I	211	216	anti-parallel
Strand 7	I	287	288	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	183	first strand
Strand 2	I	223	227	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	402	405	first strand
Strand 2	F	419	422	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	385	387	first strand
Strand 2	G	359	362	parallel
Strand 3	G	333	336	parallel
Strand 4	G	400	403	parallel
Strand 5	G	434	436	parallel
Strand 6	G	499	502	parallel
Strand 7	G	505	507	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	407	408	first strand
Strand 2	G	414	416	anti-parallel
Strand 3	G	490	492	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	385	387	first strand
Strand 2	H	357	362	parallel
Strand 3	H	332	336	parallel
Strand 4	H	400	402	parallel
Strand 5	H	434	435	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	407	408	first strand
Strand 2	H	414	416	anti-parallel
Strand 3	H	490	492	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	500	502	first strand
Strand 2	H	505	507	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	122	first strand
Strand 2	I	90	94	parallel
Strand 3	I	44	48	parallel
Strand 4	I	150	152	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	155	157	first strand
Strand 2	I	297	299	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	186	187	first strand
Strand 2	I	244	245	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	355	356	first strand
Strand 2	I	373	374	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	91	94	first strand
Strand 2	J	45	48	parallel
Strand 3	J	151	152	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	155	157	first strand
Strand 2	J	297	299	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	179	182	first strand
Strand 2	J	286	288	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	244	246	first strand
Strand 2	J	185	187	anti-parallel
Strand 3	J	291	292	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	212	214	first strand
Strand 2	J	203	206	anti-parallel
Strand 3	J	238	241	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	361	362	first strand
Strand 2	J	378	379	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	373	375	first strand
Strand 2	J	390	392	parallel
Strand 3	J	407	409	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	395	396	first strand
Strand 2	J	412	413	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D46

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D46