Analysis of interatomic Contacts of Structural Units in PDB entry:
7D48


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D48 entry

There is 1 chain in PDB entry 7D48 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7D48. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
17 37Right-handed alpha
Helix 3
AA3
A
38 42Right-handed 310
Helix 4
AA4
A
84 91Right-handed alpha
Helix 5
AA5
A
92 100Right-handed alpha
Helix 6
AA6
A
131 142Right-handed alpha
Helix 7
AA7
A
143 148Right-handed alpha
Helix 8
AA8
A
151 155Right-handed 310
Helix 9
AA9
A
183 187Right-handed 310
Helix 10
AB1
A
206 221Right-handed alpha
Helix 11
AB2
A
223 239Right-handed alpha
Helix 12
AB3
A
240 243Right-handed 310
Helix 13
AB4
A
248 260Right-handed alpha
Helix 14
AB5
A
266 282Right-handed alpha
Helix 15
AB6
A
282 288Right-handed alpha
Helix 16
AB7
A
309 333Right-handed alpha
Helix 17
AB8
A
335 348Right-handed alpha
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There are 2 sheets in PDB entry 7D48. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 51first strand
Strand 2
A
69 76anti-parallel
Strand 3
A
119 126parallel
Strand 4
A
111 114anti-parallel
Strand 5
A
104 106anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 196first strand
Strand 2
A
201 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il