Analysis of interatomic Contacts of Structural Units in PDB entry:
7D4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D4D entry

There is 1 chain in PDB entry 7D4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 80TYR 587
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7D4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 107Right-handed alpha
Helix 2
AA2
A
149 151Right-handed 310
Helix 3
AA3
A
152 163Right-handed alpha
Helix 4
AA4
A
196 200Right-handed 310
Helix 5
AA5
A
204 209Right-handed alpha
Helix 6
AA6
A
210 229Right-handed alpha
Helix 7
AA7
A
229 238Right-handed alpha
Helix 8
AA8
A
239 241Right-handed 310
Helix 9
AA9
A
244 252Right-handed alpha
Helix 10
AB1
A
262 274Right-handed alpha
Helix 11
AB2
A
277 281Right-handed 310
Helix 12
AB3
A
282 294Right-handed alpha
Helix 13
AB4
A
308 319Right-handed alpha
Helix 14
AB5
A
364 371Right-handed alpha
Helix 15
AB6
A
373 377Right-handed 310
Helix 16
AB7
A
379 389Right-handed alpha
Helix 17
AB8
A
404 409Right-handed alpha
Helix 18
AB9
A
449 457Right-handed alpha
Helix 19
AC1
A
468 484Right-handed alpha
Helix 20
AC2
A
489 496Right-handed alpha
Helix 21
AC3
A
507 509Right-handed 310
Helix 22
AC4
A
522 527Right-handed alpha
Helix 23
AC5
A
527 533Right-handed alpha
Helix 24
AC6
A
544 548Right-handed 310
Helix 25
AC7
A
553 572Right-handed alpha
Helix 26
AC8
A
574 586Right-handed alpha
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There are 7 sheets in PDB entry 7D4D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 116first strand
Strand 2
A
85 90parallel
Strand 3
A
358 361parallel
Strand 4
A
540 542parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
138 140anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
301 304anti-parallel
Strand 3
A
166 169anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
178 180anti-parallel
Strand 3
A
417 420parallel
Strand 4
A
426 428anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 334first strand
Strand 2
A
344 348anti-parallel
Strand 3
A
351 356anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
516 517anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 448first strand
Strand 2
A
394 401anti-parallel
Strand 3
A
497 505anti-parallel
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