Analysis of interatomic Contacts of Structural Units in PDB entry:
7D4Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D4Y entry

There are 2 chains in PDB entry 7D4Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	PRO 664
B	MET 1	PRO 664

There are 26 helices in PDB entry 7D4Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	191	195	Right-handed 310
Helix 2	AA2	A	204	209	Right-handed alpha
Helix 3	AA3	A	316	330	Right-handed alpha
Helix 4	AA4	A	443	454	Right-handed alpha
Helix 5	AA5	A	470	473	Right-handed 310
Helix 6	AA6	A	493	506	Right-handed alpha
Helix 7	AA7	A	528	533	Right-handed alpha
Helix 8	AA8	A	534	560	Right-handed alpha
Helix 9	AA9	A	562	564	Right-handed 310
Helix 10	AB1	A	612	622	Right-handed alpha
Helix 11	AB2	A	623	625	Right-handed 310
Helix 12	AB3	A	658	662	Right-handed 310
Helix 13	AB4	B	176	180	Right-handed 310
Helix 14	AB5	B	191	195	Right-handed 310
Helix 15	AB6	B	204	209	Right-handed alpha
Helix 16	AB7	B	317	330	Right-handed alpha
Helix 17	AB8	B	406	408	Right-handed 310
Helix 18	AB9	B	443	454	Right-handed alpha
Helix 19	AC1	B	470	473	Right-handed 310
Helix 20	AC2	B	493	506	Right-handed alpha
Helix 21	AC3	B	528	533	Right-handed alpha
Helix 22	AC4	B	534	560	Right-handed alpha
Helix 23	AC5	B	562	564	Right-handed 310
Helix 24	AC6	B	612	622	Right-handed alpha
Helix 25	AC7	B	623	625	Right-handed 310
Helix 26	AC8	B	658	662	Right-handed 310

There are 26 sheets in PDB entry 7D4Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	9	first strand
Strand 2	A	24	29	parallel
Strand 3	A	74	79	anti-parallel
Strand 4	A	49	54	anti-parallel
Strand 5	A	61	62	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	106	121	parallel
Strand 3	A	90	97	anti-parallel
Strand 4	A	39	44	anti-parallel
Strand 5	A	68	69	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	106	121	parallel
Strand 3	A	181	188	anti-parallel
Strand 4	A	247	253	anti-parallel
Strand 5	A	211	216	anti-parallel
Strand 6	A	226	230	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	282	293	parallel
Strand 3	A	264	273	anti-parallel
Strand 4	A	197	202	anti-parallel
Strand 5	A	236	238	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	390	393	parallel
Strand 3	A	362	369	parallel
Strand 4	A	352	359	anti-parallel
Strand 5	A	297	298	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	335	first strand
Strand 2	A	305	309	parallel
Strand 3	A	649	652	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	428	432	anti-parallel
Strand 3	A	459	462	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	418	first strand
Strand 2	A	421	423	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	479	first strand
Strand 2	A	486	492	anti-parallel
Strand 3	A	566	570	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	526	527	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	575	first strand
Strand 2	A	580	582	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	593	first strand
Strand 2	A	596	600	anti-parallel
Strand 3	A	627	631	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	607	first strand
Strand 2	A	610	611	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	9	first strand
Strand 2	B	24	29	parallel
Strand 3	B	74	79	anti-parallel
Strand 4	B	49	54	anti-parallel
Strand 5	B	61	62	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	20	first strand
Strand 2	B	106	121	parallel
Strand 3	B	90	97	anti-parallel
Strand 4	B	39	44	anti-parallel
Strand 5	B	68	69	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	20	first strand
Strand 2	B	106	121	parallel
Strand 3	B	181	188	anti-parallel
Strand 4	B	246	253	anti-parallel
Strand 5	B	211	216	anti-parallel
Strand 6	B	226	230	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	150	first strand
Strand 2	B	282	293	parallel
Strand 3	B	264	273	anti-parallel
Strand 4	B	197	202	anti-parallel
Strand 5	B	236	238	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	390	393	parallel
Strand 3	B	362	369	parallel
Strand 4	B	352	359	anti-parallel
Strand 5	B	297	298	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	337	first strand
Strand 2	B	305	311	parallel
Strand 3	B	649	652	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	428	432	anti-parallel
Strand 3	B	459	462	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	418	first strand
Strand 2	B	421	423	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	479	first strand
Strand 2	B	486	492	anti-parallel
Strand 3	B	566	570	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	513	first strand
Strand 2	B	526	527	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	575	first strand
Strand 2	B	580	582	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	593	first strand
Strand 2	B	596	600	anti-parallel
Strand 3	B	627	631	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	607	first strand
Strand 2	B	610	611	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D4Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D4Y