Analysis of interatomic Contacts of Structural Units in PDB entry:
7D5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D5C entry

There is 1 chain in PDB entry 7D5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 8LEU 982
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 7D5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 25Right-handed alpha
Helix 2
AA2
A
25 34Right-handed alpha
Helix 3
AA3
A
54 74Right-handed alpha
Helix 4
AA4
A
88 100Right-handed alpha
Helix 5
AA5
A
105 111Right-handed alpha
Helix 6
AA6
A
111 137Right-handed alpha
Helix 7
AA7
A
151 168Right-handed alpha
Helix 8
AA8
A
189 194Right-handed alpha
Helix 9
AA9
A
225 232Right-handed 310
Helix 10
AB1
A
258 265Right-handed 310
Helix 11
AB2
A
268 272Right-handed 310
Helix 12
AB3
A
282 286Right-handed alpha
Helix 13
AB4
A
297 302Right-handed alpha
Helix 14
AB5
A
330 340Right-handed alpha
Helix 15
AB6
A
363 367Right-handed 310
Helix 16
AB7
A
370 385Right-handed alpha
Helix 17
AB8
A
420 422Right-handed 310
Helix 18
AB9
A
423 434Right-handed alpha
Helix 19
AC1
A
438 444Right-handed alpha
Helix 20
AC2
A
444 452Right-handed alpha
Helix 21
AC3
A
484 493Right-handed alpha
Helix 22
AC4
A
501 506Right-handed alpha
Helix 23
AC5
A
527 534Right-handed alpha
Helix 24
AC6
A
534 539Right-handed alpha
Helix 25
AC7
A
546 554Right-handed alpha
Helix 26
AC8
A
564 567Right-handed 310
Helix 27
AC9
A
568 582Right-handed alpha
Helix 28
AD1
A
612 620Right-handed alpha
Helix 29
AD2
A
621 631Right-handed alpha
Helix 30
AD3
A
632 637Right-handed 310
Helix 31
AD4
A
643 654Right-handed alpha
Helix 32
AD5
A
654 677Right-handed alpha
Helix 33
AD6
A
690 713Right-handed alpha
Helix 34
AD7
A
714 717Right-handed 310
Helix 35
AD8
A
718 733Right-handed alpha
Helix 36
AD9
A
733 743Right-handed alpha
Helix 37
AE1
A
747 770Right-handed alpha
Helix 38
AE2
A
773 785Right-handed alpha
Helix 39
AE3
A
786 788Right-handed 310
Helix 40
AE4
A
789 794Right-handed alpha
Helix 41
AE5
A
795 797Right-handed 310
Helix 42
AE6
A
802 806Right-handed 310
Helix 43
AE7
A
812 816Right-handed 310
Helix 44
AE8
A
817 842Right-handed alpha
Helix 45
AE9
A
858 868Right-handed alpha
Helix 46
AF1
A
868 876Right-handed alpha
Helix 47
AF2
A
887 891Right-handed 310
Helix 48
AF3
A
954 960Right-handed alpha
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There are 9 sheets in PDB entry 7D5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
142 148parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
171 181anti-parallel
Strand 3
A
409 418anti-parallel
Strand 4
A
456 457anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 281first strand
Strand 2
A
242 248anti-parallel
Strand 3
A
253 257anti-parallel
Strand 4
A
217 223parallel
Strand 5
A
197 210anti-parallel
Strand 6
A
388 399anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 310first strand
Strand 2
A
234 237parallel
Strand 3
A
323 325anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 437first strand
Strand 2
A
588 592parallel
Strand 3
A
559 562parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 460first strand
Strand 2
A
525 526anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 481first strand
Strand 2
A
470 472anti-parallel
Strand 3
A
518 521anti-parallel
Strand 4
A
509 511anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 596first strand
Strand 2
A
640 641parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
878 884first strand
Strand 2
A
849 855parallel
Strand 3
A
971 975anti-parallel
Strand 4
A
962 966anti-parallel
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