Analysis of interatomic Contacts of Structural Units in PDB entry:
7D5K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D5K entry

There are 3 chains in PDB entry 7D5K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 235PRO 1025
B
 ALA 235PRO 1025
C
 ALA 235PRO 1025
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 7D5K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
246 249Right-handed 310
Helix 2
AA2
A
250 274Right-handed alpha
Helix 3
AA3
A
279 302Right-handed alpha
Helix 4
AA4
A
303 305Right-handed 310
Helix 5
AA5
A
313 322Right-handed alpha
Helix 6
AA6
A
346 359Right-handed alpha
Helix 7
AA7
A
363 366Right-handed 310
Helix 8
AA8
A
377 402Right-handed alpha
Helix 9
AA9
A
407 412Right-handed alpha
Helix 10
AB1
A
426 453Right-handed alpha
Helix 11
AB2
A
516 531Right-handed alpha
Helix 12
AB3
A
549 559Right-handed alpha
Helix 13
AB4
A
589 595Right-handed alpha
Helix 14
AB5
A
595 601Right-handed alpha
Helix 15
AB6
A
617 621Right-handed alpha
Helix 16
AB7
A
676 684Right-handed alpha
Helix 17
AB8
A
687 695Right-handed alpha
Helix 18
AB9
A
706 718Right-handed alpha
Helix 19
AC1
A
741 751Right-handed alpha
Helix 20
AC2
A
773 792Right-handed alpha
Helix 21
AC3
A
809 822Right-handed alpha
Helix 22
AC4
A
825 841Right-handed alpha
Helix 23
AC5
A
853 877Right-handed alpha
Helix 24
AC6
A
879 895Right-handed alpha
Helix 25
AC7
A
897 912Right-handed alpha
Helix 26
AC8
A
938 940Right-handed 310
Helix 27
AC9
A
941 965Right-handed alpha
Helix 28
AD1
A
972 996Right-handed alpha
Helix 29
AD2
A
1004 1024Right-handed alpha
Helix 30
AD3
B
246 249Right-handed 310
Helix 31
AD4
B
250 274Right-handed alpha
Helix 32
AD5
B
279 302Right-handed alpha
Helix 33
AD6
B
303 305Right-handed 310
Helix 34
AD7
B
313 322Right-handed alpha
Helix 35
AD8
B
346 359Right-handed alpha
Helix 36
AD9
B
363 366Right-handed 310
Helix 37
AE1
B
377 402Right-handed alpha
Helix 38
AE2
B
407 412Right-handed alpha
Helix 39
AE3
B
426 453Right-handed alpha
Helix 40
AE4
B
516 531Right-handed alpha
Helix 41
AE5
B
549 559Right-handed alpha
Helix 42
AE6
B
589 595Right-handed alpha
Helix 43
AE7
B
595 601Right-handed alpha
Helix 44
AE8
B
617 621Right-handed alpha
Helix 45
AE9
B
676 684Right-handed alpha
Helix 46
AF1
B
687 695Right-handed alpha
Helix 47
AF2
B
706 718Right-handed alpha
Helix 48
AF3
B
741 751Right-handed alpha
Helix 49
AF4
B
773 792Right-handed alpha
Helix 50
AF5
B
809 822Right-handed alpha
Helix 51
AF6
B
825 841Right-handed alpha
Helix 52
AF7
B
853 877Right-handed alpha
Helix 53
AF8
B
879 895Right-handed alpha
Helix 54
AF9
B
897 912Right-handed alpha
Helix 55
AG1
B
938 940Right-handed 310
Helix 56
AG2
B
941 965Right-handed alpha
Helix 57
AG3
B
972 996Right-handed alpha
Helix 58
AG4
B
1004 1024Right-handed alpha
Helix 59
AG5
C
246 249Right-handed 310
Helix 60
AG6
C
250 274Right-handed alpha
Helix 61
AG7
C
279 302Right-handed alpha
Helix 62
AG8
C
303 305Right-handed 310
Helix 63
AG9
C
313 322Right-handed alpha
Helix 64
AH1
C
346 359Right-handed alpha
Helix 65
AH2
C
363 366Right-handed 310
Helix 66
AH3
C
377 402Right-handed alpha
Helix 67
AH4
C
407 412Right-handed alpha
Helix 68
AH5
C
426 453Right-handed alpha
Helix 69
AH6
C
516 531Right-handed alpha
Helix 70
AH7
C
549 559Right-handed alpha
Helix 71
AH8
C
589 595Right-handed alpha
Helix 72
AH9
C
595 601Right-handed alpha
Helix 73
AI1
C
617 621Right-handed alpha
Helix 74
AI2
C
676 684Right-handed alpha
Helix 75
AI3
C
687 695Right-handed alpha
Helix 76
AI4
C
706 718Right-handed alpha
Helix 77
AI5
C
741 751Right-handed alpha
Helix 78
AI6
C
773 792Right-handed alpha
Helix 79
AI7
C
809 822Right-handed alpha
Helix 80
AI8
C
825 841Right-handed alpha
Helix 81
AI9
C
853 877Right-handed alpha
Helix 82
AJ1
C
879 895Right-handed alpha
Helix 83
AJ2
C
897 912Right-handed alpha
Helix 84
AJ3
C
938 940Right-handed 310
Helix 85
AJ4
C
941 965Right-handed alpha
Helix 86
AJ5
C
972 996Right-handed alpha
Helix 87
AJ6
C
1004 1024Right-handed alpha
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There are 9 sheets in PDB entry 7D5K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 244first strand
Strand 2
A
308 312anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 483first strand
Strand 2
A
499 504anti-parallel
Strand 3
A
368 373parallel
Strand 4
A
333 339parallel
Strand 5
A
535 539parallel
Strand 6
A
613 616anti-parallel
Strand 7
A
567 571anti-parallel
Strand 8
A
755 758parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 545first strand
Strand 2
A
766 769anti-parallel
Strand 3
A
575 577parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 244first strand
Strand 2
B
308 312anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
479 483first strand
Strand 2
B
499 504anti-parallel
Strand 3
B
368 373parallel
Strand 4
B
333 339parallel
Strand 5
B
535 539parallel
Strand 6
B
613 616anti-parallel
Strand 7
B
567 571anti-parallel
Strand 8
B
755 758parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
543 545first strand
Strand 2
B
766 769anti-parallel
Strand 3
B
575 577parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
240 244first strand
Strand 2
C
308 312anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
479 483first strand
Strand 2
C
499 504anti-parallel
Strand 3
C
368 373parallel
Strand 4
C
333 339parallel
Strand 5
C
535 539parallel
Strand 6
C
613 616anti-parallel
Strand 7
C
567 571anti-parallel
Strand 8
C
755 758parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
543 545first strand
Strand 2
C
766 769anti-parallel
Strand 3
C
575 577parallel
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