Analysis of interatomic Contacts of Structural Units in PDB entry:
7D5N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D5N entry

There are 2 chains in PDB entry 7D5N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2TYR 389
B
 ILE 2LEU 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7D5N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 35Right-handed alpha
Helix 2
AA2
A
49 60Right-handed alpha
Helix 3
AA3
A
63 67Right-handed 310
Helix 4
AA4
A
70 80Right-handed alpha
Helix 5
AA5
A
93 95Right-handed 310
Helix 6
AA6
A
96 107Right-handed alpha
Helix 7
AA7
A
120 134Right-handed alpha
Helix 8
AA8
A
142 146Right-handed 310
Helix 9
AA9
A
147 159Right-handed alpha
Helix 10
AB1
A
187 192Right-handed alpha
Helix 11
AB2
A
201 206Right-handed alpha
Helix 12
AB3
A
207 218Right-handed alpha
Helix 13
AB4
A
234 238Right-handed 310
Helix 14
AB5
A
312 316Right-handed 310
Helix 15
AB6
A
328 349Right-handed alpha
Helix 16
AB7
A
351 358Right-handed alpha
Helix 17
AB8
A
362 382Right-handed alpha
Helix 18
AB9
B
25 35Right-handed alpha
Helix 19
AC1
B
49 60Right-handed alpha
Helix 20
AC2
B
63 67Right-handed 310
Helix 21
AC3
B
70 80Right-handed alpha
Helix 22
AC4
B
93 95Right-handed 310
Helix 23
AC5
B
96 107Right-handed alpha
Helix 24
AC6
B
120 134Right-handed alpha
Helix 25
AC7
B
142 146Right-handed 310
Helix 26
AC8
B
147 159Right-handed alpha
Helix 27
AC9
B
180 184Right-handed 310
Helix 28
AD1
B
185 192Right-handed alpha
Helix 29
AD2
B
193 198Right-handed alpha
Helix 30
AD3
B
201 206Right-handed alpha
Helix 31
AD4
B
207 218Right-handed alpha
Helix 32
AD5
B
234 238Right-handed 310
Helix 33
AD6
B
312 316Right-handed 310
Helix 34
AD7
B
328 349Right-handed alpha
Helix 35
AD8
B
351 358Right-handed alpha
Helix 36
AD9
B
362 382Right-handed alpha
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There are 4 sheets in PDB entry 7D5N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
12 18parallel
Strand 3
A
87 91parallel
Strand 4
A
110 113parallel
Strand 5
A
138 140parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 305first strand
Strand 2
A
291 296anti-parallel
Strand 3
A
280 285anti-parallel
Strand 4
A
271 277anti-parallel
Strand 5
A
165 173anti-parallel
Strand 6
A
255 261parallel
Strand 7
A
243 250anti-parallel
Strand 8
A
223 231anti-parallel
Strand 9
A
387 388anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 45first strand
Strand 2
B
12 18parallel
Strand 3
B
87 91parallel
Strand 4
B
110 113parallel
Strand 5
B
138 140parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 305first strand
Strand 2
B
291 296anti-parallel
Strand 3
B
280 285anti-parallel
Strand 4
B
271 277anti-parallel
Strand 5
B
165 173anti-parallel
Strand 6
B
255 261parallel
Strand 7
B
243 250anti-parallel
Strand 8
B
223 231anti-parallel
Strand 9
B
387 388anti-parallel
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