Analysis of interatomic Contacts of Structural Units in PDB entry:
7D5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D5P entry

There are 4 chains in PDB entry 7D5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 10PRO 452
B
 LEU 11PRO 452
C
 GLN 5SER 135
D
 GLN 5SER 135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 7D5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
22 24Right-handed 310
Helix 3
AA3
A
28 31Right-handed 310
Helix 4
AA4
A
32 40Right-handed alpha
Helix 5
AA5
A
45 73Right-handed alpha
Helix 6
AA6
A
73 95Right-handed alpha
Helix 7
AA7
A
97 127Right-handed alpha
Helix 8
AA8
A
132 149Right-handed alpha
Helix 9
AA9
A
149 161Right-handed alpha
Helix 10
AB1
A
167 180Right-handed alpha
Helix 11
AB2
A
201 214Right-handed alpha
Helix 12
AB3
A
214 222Right-handed alpha
Helix 13
AB4
A
228 245Right-handed alpha
Helix 14
AB5
A
263 276Right-handed alpha
Helix 15
AB6
A
279 292Right-handed alpha
Helix 16
AB7
A
296 313Right-handed alpha
Helix 17
AB8
A
314 322Right-handed alpha
Helix 18
AB9
A
328 347Right-handed alpha
Helix 19
AC1
A
348 350Right-handed 310
Helix 20
AC2
A
355 385Right-handed alpha
Helix 21
AC3
A
390 423Right-handed alpha
Helix 22
AC4
A
424 446Right-handed alpha
Helix 23
AC5
A
447 450Right-handed 310
Helix 24
AC6
B
12 21Right-handed alpha
Helix 25
AC7
B
22 24Right-handed 310
Helix 26
AC8
B
28 31Right-handed 310
Helix 27
AC9
B
32 40Right-handed alpha
Helix 28
AD1
B
45 73Right-handed alpha
Helix 29
AD2
B
73 95Right-handed alpha
Helix 30
AD3
B
97 127Right-handed alpha
Helix 31
AD4
B
131 149Right-handed alpha
Helix 32
AD5
B
149 161Right-handed alpha
Helix 33
AD6
B
167 180Right-handed alpha
Helix 34
AD7
B
201 214Right-handed alpha
Helix 35
AD8
B
214 222Right-handed alpha
Helix 36
AD9
B
228 245Right-handed alpha
Helix 37
AE1
B
263 276Right-handed alpha
Helix 38
AE2
B
279 292Right-handed alpha
Helix 39
AE3
B
296 313Right-handed alpha
Helix 40
AE4
B
315 322Right-handed alpha
Helix 41
AE5
B
328 347Right-handed alpha
Helix 42
AE6
B
348 350Right-handed 310
Helix 43
AE7
B
355 385Right-handed alpha
Helix 44
AE8
B
390 423Right-handed alpha
Helix 45
AE9
B
424 446Right-handed alpha
Helix 46
AF1
B
447 450Right-handed 310
Helix 47
AF2
C
81 84Right-handed 310
Helix 48
AF3
D
81 84Right-handed 310
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There are 8 sheets in PDB entry 7D5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 12first strand
Strand 2
C
21 28anti-parallel
Strand 3
C
86 91anti-parallel
Strand 4
C
76 79anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
129 134parallel
Strand 3
C
99 106anti-parallel
Strand 4
C
40 46anti-parallel
Strand 5
C
53 59anti-parallel
Strand 6
C
64 67anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
129 134parallel
Strand 3
C
99 106anti-parallel
Strand 4
C
122 125anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 38first strand
Strand 2
C
109 110anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 12first strand
Strand 2
D
21 28anti-parallel
Strand 3
D
86 91anti-parallel
Strand 4
D
76 79anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 17first strand
Strand 2
D
129 134parallel
Strand 3
D
99 106anti-parallel
Strand 4
D
40 46anti-parallel
Strand 5
D
53 59anti-parallel
Strand 6
D
64 67anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 17first strand
Strand 2
D
129 134parallel
Strand 3
D
99 106anti-parallel
Strand 4
D
122 125anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 38first strand
Strand 2
D
109 110anti-parallel
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