Analysis of interatomic Contacts of Structural Units in PDB entry:
7D5R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D5R entry

There are 2 chains in PDB entry 7D5R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 3	PRO 664
B	LEU 3	PRO 664

There are 35 helices in PDB entry 7D5R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	175	180	Right-handed 310
Helix 2	AA2	A	192	196	Right-handed alpha
Helix 3	AA3	A	204	209	Right-handed alpha
Helix 4	AA4	A	222	226	Right-handed 310
Helix 5	AA5	A	319	331	Right-handed alpha
Helix 6	AA6	A	348	351	Right-handed alpha
Helix 7	AA7	A	378	384	Right-handed alpha
Helix 8	AA8	A	406	410	Right-handed 310
Helix 9	AA9	A	443	452	Right-handed alpha
Helix 10	AB1	A	470	473	Right-handed 310
Helix 11	AB2	A	493	505	Right-handed alpha
Helix 12	AB3	A	528	533	Right-handed alpha
Helix 13	AB4	A	534	560	Right-handed alpha
Helix 14	AB5	A	562	564	Right-handed 310
Helix 15	AB6	A	611	622	Right-handed alpha
Helix 16	AB7	A	623	625	Right-handed 310
Helix 17	AB8	A	637	641	Right-handed 310
Helix 18	AB9	A	658	662	Right-handed 310
Helix 19	AC1	B	175	180	Right-handed 310
Helix 20	AC2	B	192	196	Right-handed alpha
Helix 21	AC3	B	204	209	Right-handed alpha
Helix 22	AC4	B	222	224	Right-handed 310
Helix 23	AC5	B	318	331	Right-handed alpha
Helix 24	AC6	B	378	384	Right-handed alpha
Helix 25	AC7	B	406	410	Right-handed 310
Helix 26	AC8	B	443	452	Right-handed alpha
Helix 27	AC9	B	470	473	Right-handed 310
Helix 28	AD1	B	493	506	Right-handed alpha
Helix 29	AD2	B	528	533	Right-handed alpha
Helix 30	AD3	B	534	560	Right-handed alpha
Helix 31	AD4	B	562	564	Right-handed 310
Helix 32	AD5	B	611	622	Right-handed alpha
Helix 33	AD6	B	623	625	Right-handed 310
Helix 34	AD7	B	637	641	Right-handed 310
Helix 35	AD8	B	658	662	Right-handed 310

There are 24 sheets in PDB entry 7D5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	9	first strand
Strand 2	A	24	29	parallel
Strand 3	A	74	79	anti-parallel
Strand 4	A	49	54	anti-parallel
Strand 5	A	61	62	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	106	121	parallel
Strand 3	A	90	97	anti-parallel
Strand 4	A	39	44	anti-parallel
Strand 5	A	68	69	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	106	121	parallel
Strand 3	A	181	188	anti-parallel
Strand 4	A	245	253	anti-parallel
Strand 5	A	211	215	anti-parallel
Strand 6	A	227	230	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	282	293	parallel
Strand 3	A	264	273	anti-parallel
Strand 4	A	197	203	anti-parallel
Strand 5	A	236	238	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	A	352	357	anti-parallel
Strand 3	A	364	369	anti-parallel
Strand 4	A	390	393	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	305	310	parallel
Strand 3	A	648	652	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	A	428	430	anti-parallel
Strand 3	A	459	460	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	418	first strand
Strand 2	A	421	423	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	479	first strand
Strand 2	A	486	492	anti-parallel
Strand 3	A	566	570	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	526	527	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	574	first strand
Strand 2	A	581	582	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	593	first strand
Strand 2	A	596	600	anti-parallel
Strand 3	A	627	631	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	9	first strand
Strand 2	B	24	29	parallel
Strand 3	B	74	79	anti-parallel
Strand 4	B	49	54	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	20	first strand
Strand 2	B	106	120	parallel
Strand 3	B	90	97	anti-parallel
Strand 4	B	39	44	anti-parallel
Strand 5	B	68	69	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	20	first strand
Strand 2	B	106	120	parallel
Strand 3	B	181	188	anti-parallel
Strand 4	B	246	253	anti-parallel
Strand 5	B	211	216	anti-parallel
Strand 6	B	226	230	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	150	first strand
Strand 2	B	282	293	parallel
Strand 3	B	264	273	anti-parallel
Strand 4	B	197	203	anti-parallel
Strand 5	B	236	238	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	336	first strand
Strand 2	B	305	310	parallel
Strand 3	B	648	652	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	357	first strand
Strand 2	B	364	369	anti-parallel
Strand 3	B	390	393	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	412	first strand
Strand 2	B	428	430	anti-parallel
Strand 3	B	459	460	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	418	first strand
Strand 2	B	421	423	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	479	first strand
Strand 2	B	486	492	anti-parallel
Strand 3	B	566	570	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	513	first strand
Strand 2	B	526	527	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	574	first strand
Strand 2	B	581	582	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	593	first strand
Strand 2	B	596	600	anti-parallel
Strand 3	B	627	631	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D5R

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D5R