Analysis of interatomic Contacts of Structural Units in PDB entry:
7D61

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D61 entry

There are 11 chains in PDB entry 7D61 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 288
B	MET 1	GLY 288
C	MET 1	GLY 288
D	MET 1	GLY 288
E	MET 1	GLY 288
F	MET 1	GLY 288
G	MET 1	GLY 288
H	MET 1	GLY 288
I	MET 1	GLY 288
J	MET 1	GLY 288
K	MET 1	GLY 288

There are178 helices in PDB entry 7D61. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	14	Right-handed alpha
Helix 2	AA2	A	17	38	Right-handed alpha
Helix 3	AA3	A	46	69	Right-handed alpha
Helix 4	AA4	A	70	78	Right-handed alpha
Helix 5	AA5	A	83	87	Right-handed 310
Helix 6	AA6	A	94	108	Right-handed alpha
Helix 7	AA7	A	108	120	Right-handed alpha
Helix 8	AA8	A	123	131	Right-handed alpha
Helix 9	AA9	A	137	142	Right-handed alpha
Helix 10	AB1	A	146	150	Right-handed 310
Helix 11	AB2	A	152	156	Right-handed 310
Helix 12	AB3	A	166	171	Right-handed alpha
Helix 13	AB4	A	171	176	Right-handed alpha
Helix 14	AB5	A	177	204	Right-handed alpha
Helix 15	AB6	A	208	247	Right-handed alpha
Helix 16	AB7	A	258	265	Right-handed alpha
Helix 17	AB8	A	279	288	Right-handed alpha
Helix 18	AB9	B	7	14	Right-handed alpha
Helix 19	AC1	B	18	38	Right-handed alpha
Helix 20	AC2	B	46	52	Right-handed alpha
Helix 21	AC3	B	52	69	Right-handed alpha
Helix 22	AC4	B	70	78	Right-handed alpha
Helix 23	AC5	B	83	87	Right-handed 310
Helix 24	AC6	B	94	107	Right-handed alpha
Helix 25	AC7	B	108	120	Right-handed alpha
Helix 26	AC8	B	123	130	Right-handed alpha
Helix 27	AC9	B	137	142	Right-handed alpha
Helix 28	AD1	B	146	150	Right-handed 310
Helix 29	AD2	B	152	156	Right-handed 310
Helix 30	AD3	B	166	176	Right-handed alpha
Helix 31	AD4	B	177	204	Right-handed alpha
Helix 32	AD5	B	208	247	Right-handed alpha
Helix 33	AD6	B	258	265	Right-handed alpha
Helix 34	AD7	B	279	288	Right-handed alpha
Helix 35	AD8	C	7	14	Right-handed alpha
Helix 36	AD9	C	18	38	Right-handed alpha
Helix 37	AE1	C	46	52	Right-handed alpha
Helix 38	AE2	C	52	69	Right-handed alpha
Helix 39	AE3	C	70	78	Right-handed alpha
Helix 40	AE4	C	83	87	Right-handed 310
Helix 41	AE5	C	94	107	Right-handed alpha
Helix 42	AE6	C	108	120	Right-handed alpha
Helix 43	AE7	C	123	131	Right-handed alpha
Helix 44	AE8	C	137	142	Right-handed alpha
Helix 45	AE9	C	146	150	Right-handed 310
Helix 46	AF1	C	152	156	Right-handed 310
Helix 47	AF2	C	166	171	Right-handed alpha
Helix 48	AF3	C	177	204	Right-handed alpha
Helix 49	AF4	C	208	247	Right-handed alpha
Helix 50	AF5	C	258	265	Right-handed alpha
Helix 51	AF6	C	279	288	Right-handed alpha
Helix 52	AF7	D	7	13	Right-handed alpha
Helix 53	AF8	D	17	38	Right-handed alpha
Helix 54	AF9	D	46	52	Right-handed alpha
Helix 55	AG1	D	52	69	Right-handed alpha
Helix 56	AG2	D	70	78	Right-handed alpha
Helix 57	AG3	D	83	87	Right-handed 310
Helix 58	AG4	D	94	108	Right-handed alpha
Helix 59	AG5	D	108	118	Right-handed alpha
Helix 60	AG6	D	123	131	Right-handed alpha
Helix 61	AG7	D	137	142	Right-handed alpha
Helix 62	AG8	D	146	150	Right-handed 310
Helix 63	AG9	D	152	156	Right-handed 310
Helix 64	AH1	D	177	204	Right-handed alpha
Helix 65	AH2	D	208	247	Right-handed alpha
Helix 66	AH3	D	258	265	Right-handed alpha
Helix 67	AH4	D	279	288	Right-handed alpha
Helix 68	AH5	E	7	14	Right-handed alpha
Helix 69	AH6	E	17	38	Right-handed alpha
Helix 70	AH7	E	46	69	Right-handed alpha
Helix 71	AH8	E	70	78	Right-handed alpha
Helix 72	AH9	E	83	87	Right-handed 310
Helix 73	AI1	E	94	107	Right-handed alpha
Helix 74	AI2	E	108	120	Right-handed alpha
Helix 75	AI3	E	123	131	Right-handed alpha
Helix 76	AI4	E	137	142	Right-handed alpha
Helix 77	AI5	E	146	150	Right-handed 310
Helix 78	AI6	E	152	156	Right-handed 310
Helix 79	AI7	E	167	176	Right-handed alpha
Helix 80	AI8	E	177	204	Right-handed alpha
Helix 81	AI9	E	208	247	Right-handed alpha
Helix 82	AJ1	E	258	265	Right-handed alpha
Helix 83	AJ2	E	279	288	Right-handed alpha
Helix 84	AJ3	F	7	14	Right-handed alpha
Helix 85	AJ4	F	17	38	Right-handed alpha
Helix 86	AJ5	F	46	69	Right-handed alpha
Helix 87	AJ6	F	70	78	Right-handed alpha
Helix 88	AJ7	F	83	87	Right-handed 310
Helix 89	AJ8	F	94	107	Right-handed alpha
Helix 90	AJ9	F	108	118	Right-handed alpha
Helix 91	AK1	F	123	131	Right-handed alpha
Helix 92	AK2	F	137	142	Right-handed alpha
Helix 93	AK3	F	146	150	Right-handed 310
Helix 94	AK4	F	152	156	Right-handed 310
Helix 95	AK5	F	166	171	Right-handed alpha
Helix 96	AK6	F	177	204	Right-handed alpha
Helix 97	AK7	F	208	247	Right-handed alpha
Helix 98	AK8	F	258	265	Right-handed alpha
Helix 99	AK9	F	279	288	Right-handed alpha
Helix 100	AL1	G	7	14	Right-handed alpha
Helix 101	AL2	G	18	38	Right-handed alpha
Helix 102	AL3	G	46	52	Right-handed alpha
Helix 103	AL4	G	52	69	Right-handed alpha
Helix 104	AL5	G	70	78	Right-handed alpha
Helix 105	AL6	G	83	87	Right-handed 310
Helix 106	AL7	G	94	108	Right-handed alpha
Helix 107	AL8	G	108	120	Right-handed alpha
Helix 108	AL9	G	122	131	Right-handed alpha
Helix 109	AM1	G	137	142	Right-handed alpha
Helix 110	AM2	G	146	150	Right-handed 310
Helix 111	AM3	G	152	156	Right-handed 310
Helix 112	AM4	G	167	173	Right-handed alpha
Helix 113	AM5	G	177	204	Right-handed alpha
Helix 114	AM6	G	208	247	Right-handed alpha
Helix 115	AM7	G	258	265	Right-handed alpha
Helix 116	AM8	G	279	288	Right-handed alpha
Helix 117	AM9	H	7	14	Right-handed alpha
Helix 118	AN1	H	18	38	Right-handed alpha
Helix 119	AN2	H	46	69	Right-handed alpha
Helix 120	AN3	H	70	78	Right-handed alpha
Helix 121	AN4	H	83	87	Right-handed 310
Helix 122	AN5	H	94	108	Right-handed alpha
Helix 123	AN6	H	108	120	Right-handed alpha
Helix 124	AN7	H	123	131	Right-handed alpha
Helix 125	AN8	H	137	142	Right-handed alpha
Helix 126	AN9	H	146	150	Right-handed 310
Helix 127	AO1	H	152	156	Right-handed 310
Helix 128	AO2	H	177	204	Right-handed alpha
Helix 129	AO3	H	208	247	Right-handed alpha
Helix 130	AO4	H	258	265	Right-handed alpha
Helix 131	AO5	H	279	288	Right-handed alpha
Helix 132	AO6	I	7	14	Right-handed alpha
Helix 133	AO7	I	17	38	Right-handed alpha
Helix 134	AO8	I	46	52	Right-handed alpha
Helix 135	AO9	I	52	69	Right-handed alpha
Helix 136	AP1	I	70	78	Right-handed alpha
Helix 137	AP2	I	94	107	Right-handed alpha
Helix 138	AP3	I	108	118	Right-handed alpha
Helix 139	AP4	I	122	131	Right-handed alpha
Helix 140	AP5	I	137	142	Right-handed alpha
Helix 141	AP6	I	146	150	Right-handed 310
Helix 142	AP7	I	152	156	Right-handed 310
Helix 143	AP8	I	177	204	Right-handed alpha
Helix 144	AP9	I	208	247	Right-handed alpha
Helix 145	AQ1	I	258	265	Right-handed alpha
Helix 146	AQ2	I	279	288	Right-handed alpha
Helix 147	AQ3	J	7	14	Right-handed alpha
Helix 148	AQ4	J	17	38	Right-handed alpha
Helix 149	AQ5	J	46	69	Right-handed alpha
Helix 150	AQ6	J	70	78	Right-handed alpha
Helix 151	AQ7	J	83	87	Right-handed 310
Helix 152	AQ8	J	94	108	Right-handed alpha
Helix 153	AQ9	J	108	120	Right-handed alpha
Helix 154	AR1	J	123	130	Right-handed alpha
Helix 155	AR2	J	146	150	Right-handed 310
Helix 156	AR3	J	152	156	Right-handed 310
Helix 157	AR4	J	166	171	Right-handed alpha
Helix 158	AR5	J	177	204	Right-handed alpha
Helix 159	AR6	J	208	247	Right-handed alpha
Helix 160	AR7	J	258	265	Right-handed alpha
Helix 161	AR8	J	279	288	Right-handed alpha
Helix 162	AR9	K	7	14	Right-handed alpha
Helix 163	AS1	K	17	38	Right-handed alpha
Helix 164	AS2	K	46	52	Right-handed alpha
Helix 165	AS3	K	52	69	Right-handed alpha
Helix 166	AS4	K	70	78	Right-handed alpha
Helix 167	AS5	K	83	87	Right-handed 310
Helix 168	AS6	K	94	107	Right-handed alpha
Helix 169	AS7	K	108	118	Right-handed alpha
Helix 170	AS8	K	122	131	Right-handed alpha
Helix 171	AS9	K	146	150	Right-handed 310
Helix 172	AT1	K	152	156	Right-handed 310
Helix 173	AT2	K	166	171	Right-handed alpha
Helix 174	AT3	K	171	176	Right-handed alpha
Helix 175	AT4	K	177	204	Right-handed alpha
Helix 176	AT5	K	208	247	Right-handed alpha
Helix 177	AT6	K	258	265	Right-handed alpha
Helix 178	AT7	K	279	288	Right-handed alpha

There are no sheets in PDB entry 7D61

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D61

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D61