Analysis of interatomic Contacts of Structural Units in PDB entry:
7D62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D62 entry

There are 2 chains in PDB entry 7D62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5GLY 310
B
 SER 3GLY 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7D62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
36 42Right-handed alpha
Helix 3
AA3
A
91 100Right-handed alpha
Helix 4
AA4
A
101 105Right-handed 310
Helix 5
AA5
A
107 109Right-handed 310
Helix 6
AA6
A
110 118Right-handed alpha
Helix 7
AA7
A
126 131Right-handed alpha
Helix 8
AA8
A
134 144Right-handed alpha
Helix 9
AA9
A
145 148Right-handed 310
Helix 10
AB1
A
158 171Right-handed alpha
Helix 11
AB2
A
174 180Right-handed alpha
Helix 12
AB3
A
181 205Right-handed alpha
Helix 13
AB4
A
229 235Right-handed alpha
Helix 14
AB5
A
248 251Right-handed 310
Helix 15
AB6
A
269 276Right-handed alpha
Helix 16
AB7
A
291 293Right-handed 310
Helix 17
AB8
A
294 310Right-handed alpha
Helix 18
AB9
B
13 26Right-handed alpha
Helix 19
AC1
B
36 43Right-handed alpha
Helix 20
AC2
B
91 100Right-handed alpha
Helix 21
AC3
B
101 105Right-handed 310
Helix 22
AC4
B
109 118Right-handed alpha
Helix 23
AC5
B
126 131Right-handed alpha
Helix 24
AC6
B
134 144Right-handed alpha
Helix 25
AC7
B
145 148Right-handed 310
Helix 26
AC8
B
158 170Right-handed alpha
Helix 27
AC9
B
174 179Right-handed alpha
Helix 28
AD1
B
181 205Right-handed alpha
Helix 29
AD2
B
229 235Right-handed alpha
Helix 30
AD3
B
248 251Right-handed 310
Helix 31
AD4
B
269 277Right-handed alpha
Helix 32
AD5
B
291 293Right-handed 310
Helix 33
AD6
B
294 310Right-handed alpha
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There are 4 sheets in PDB entry 7D62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
6 10parallel
Strand 3
A
51 54parallel
Strand 4
A
64 67parallel
Strand 5
A
83 85parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 209first strand
Strand 2
A
212 216anti-parallel
Strand 3
A
240 246parallel
Strand 4
A
253 259anti-parallel
Strand 5
A
285 290anti-parallel
Strand 6
A
280 282anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 34first strand
Strand 2
B
6 10parallel
Strand 3
B
51 54parallel
Strand 4
B
64 67parallel
Strand 5
B
84 85parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 209first strand
Strand 2
B
212 216anti-parallel
Strand 3
B
240 246parallel
Strand 4
B
253 259anti-parallel
Strand 5
B
285 290anti-parallel
Strand 6
B
280 281anti-parallel
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