Analysis of interatomic Contacts of Structural Units in PDB entry:
7D69


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D69 entry

There are 10 chains in PDB entry 7D69 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 51GLU 140
B
 ASP 20GLY 97
D
 GLU 28SER 123
E
 LYS 43TYR 141
F
 ASP 20GLY 97
H
 GLU 28SER 123
C
 LYS 12ARG 106
G
 LYS 12ARG 106
I
 T 1 A 125
J
 T 1 A 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 7D69. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 58Right-handed alpha
Helix 2
AA2
A
64 78Right-handed alpha
Helix 3
AA3
A
88 117Right-handed alpha
Helix 4
AA4
A
123 133Right-handed alpha
Helix 5
AA5
B
21 25Right-handed 310
Helix 6
AA6
B
26 37Right-handed alpha
Helix 7
AA7
B
45 72Right-handed alpha
Helix 8
AA8
B
78 90Right-handed alpha
Helix 9
AA9
D
30 45Right-handed alpha
Helix 10
AB1
D
54 84Right-handed alpha
Helix 11
AB2
D
89 101Right-handed alpha
Helix 12
AB3
D
103 122Right-handed alpha
Helix 13
AB4
E
45 58Right-handed alpha
Helix 14
AB5
E
64 79Right-handed alpha
Helix 15
AB6
E
88 117Right-handed alpha
Helix 16
AB7
E
123 133Right-handed alpha
Helix 17
AB8
F
21 25Right-handed 310
Helix 18
AB9
F
26 38Right-handed alpha
Helix 19
AC1
F
44 72Right-handed alpha
Helix 20
AC2
F
78 88Right-handed alpha
Helix 21
AC3
H
30 43Right-handed alpha
Helix 22
AC4
H
54 84Right-handed alpha
Helix 23
AC5
H
89 101Right-handed alpha
Helix 24
AC6
H
103 122Right-handed alpha
Helix 25
AC7
C
13 18Right-handed alpha
Helix 26
AC8
C
23 34Right-handed alpha
Helix 27
AC9
C
42 68Right-handed alpha
Helix 28
AD1
C
76 87Right-handed alpha
Helix 29
AD2
C
87 94Right-handed alpha
Helix 30
AD3
G
13 18Right-handed alpha
Helix 31
AD4
G
23 34Right-handed alpha
Helix 32
AD5
G
43 68Right-handed alpha
Helix 33
AD6
G
76 87Right-handed alpha
Helix 34
AD7
G
87 94Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7D69. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
B
76 77parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
B
41 42parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
G
98 99parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
86 87first strand
Strand 2
F
76 77parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
121 122first strand
Strand 2
F
41 42parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
92 94first strand
Strand 2
C
97 99parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il