Analysis of interatomic Contacts of Structural Units in PDB entry:
7D6B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D6B entry

There are 2 chains in PDB entry 7D6B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 26ASN 500
B
 ALA 24ASN 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 7D6B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
43 48Right-handed alpha
Helix 3
AA3
A
59 66Right-handed alpha
Helix 4
AA4
A
82 98Right-handed alpha
Helix 5
AA5
A
107 112Right-handed alpha
Helix 6
AA6
A
121 138Right-handed alpha
Helix 7
AA7
A
152 160Right-handed alpha
Helix 8
AA8
A
161 165Right-handed 310
Helix 9
AA9
A
166 183Right-handed alpha
Helix 10
AB1
A
194 204Right-handed alpha
Helix 11
AB2
A
228 252Right-handed alpha
Helix 12
AB3
A
252 257Right-handed alpha
Helix 13
AB4
A
275 288Right-handed alpha
Helix 14
AB5
A
290 300Right-handed alpha
Helix 15
AB6
A
303 311Right-handed alpha
Helix 16
AB7
A
312 314Right-handed 310
Helix 17
AB8
A
318 326Right-handed alpha
Helix 18
AB9
A
385 399Right-handed alpha
Helix 19
AC1
A
420 426Right-handed alpha
Helix 20
AC2
A
427 447Right-handed alpha
Helix 21
AC3
A
464 471Right-handed 310
Helix 22
AC4
A
488 500Right-handed alpha
Helix 23
AC5
B
28 32Right-handed 310
Helix 24
AC6
B
43 48Right-handed alpha
Helix 25
AC7
B
59 66Right-handed alpha
Helix 26
AC8
B
82 97Right-handed alpha
Helix 27
AC9
B
107 112Right-handed alpha
Helix 28
AD1
B
114 118Right-handed 310
Helix 29
AD2
B
121 138Right-handed alpha
Helix 30
AD3
B
152 160Right-handed alpha
Helix 31
AD4
B
161 165Right-handed 310
Helix 32
AD5
B
166 183Right-handed alpha
Helix 33
AD6
B
194 204Right-handed alpha
Helix 34
AD7
B
228 252Right-handed alpha
Helix 35
AD8
B
252 257Right-handed alpha
Helix 36
AD9
B
275 290Right-handed alpha
Helix 37
AE1
B
290 300Right-handed alpha
Helix 38
AE2
B
303 311Right-handed alpha
Helix 39
AE3
B
312 314Right-handed 310
Helix 40
AE4
B
318 326Right-handed alpha
Helix 41
AE5
B
385 400Right-handed alpha
Helix 42
AE6
B
420 426Right-handed alpha
Helix 43
AE7
B
427 447Right-handed alpha
Helix 44
AE8
B
464 471Right-handed 310
Helix 45
AE9
B
488 500Right-handed alpha
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There are 9 sheets in PDB entry 7D6B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
101 105parallel
Strand 3
A
141 147parallel
Strand 4
A
188 193parallel
Strand 5
A
259 265parallel
Strand 6
A
331 335parallel
Strand 7
A
404 409parallel
Strand 8
A
451 457parallel
Strand 9
A
37 41parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 271first strand
Strand 2
A
339 344parallel
Strand 3
A
361 364anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
382 383anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 479first strand
Strand 2
A
484 487anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 41first strand
Strand 2
B
101 105parallel
Strand 3
B
141 147parallel
Strand 4
B
188 193parallel
Strand 5
B
259 265parallel
Strand 6
B
331 335parallel
Strand 7
B
404 409parallel
Strand 8
B
451 457parallel
Strand 9
B
37 41parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 271first strand
Strand 2
B
339 344parallel
Strand 3
B
361 364anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 367first strand
Strand 2
B
370 371anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 375first strand
Strand 2
B
382 383anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
476 478first strand
Strand 2
B
485 487anti-parallel
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