Analysis of interatomic Contacts of Structural Units in PDB entry:
7D6D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D6D entry

There are 16 chains in PDB entry 7D6D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 142	SER 521
B	PHE 142	SER 521
C	PHE 142	SER 521
D	PHE 142	SER 521
E	PHE 142	SER 521
F	PHE 142	SER 521
G	PHE 142	SER 521
H	PHE 142	SER 521
I	PHE 142	SER 521
J	PHE 142	SER 521
K	PHE 142	SER 521
L	PHE 142	SER 521
M	PHE 142	SER 521
N	PHE 142	SER 521
O	PHE 142	SER 521
P	PHE 142	SER 521

There are176 helices in PDB entry 7D6D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	188	203	Right-handed alpha
Helix 2	AA2	A	225	229	Right-handed 310
Helix 3	AA3	A	233	250	Right-handed alpha
Helix 4	AA4	A	257	266	Right-handed alpha
Helix 5	AA5	A	271	275	Right-handed 310
Helix 6	AA6	A	278	280	Right-handed 310
Helix 7	AA7	A	281	296	Right-handed alpha
Helix 8	AA8	A	296	301	Right-handed alpha
Helix 9	AA9	A	303	355	Right-handed alpha
Helix 10	AB1	A	359	436	Right-handed alpha
Helix 11	AB2	A	442	519	Right-handed alpha
Helix 12	AB3	B	188	203	Right-handed alpha
Helix 13	AB4	B	225	229	Right-handed 310
Helix 14	AB5	B	233	250	Right-handed alpha
Helix 15	AB6	B	257	266	Right-handed alpha
Helix 16	AB7	B	271	275	Right-handed 310
Helix 17	AB8	B	278	280	Right-handed 310
Helix 18	AB9	B	281	296	Right-handed alpha
Helix 19	AC1	B	296	301	Right-handed alpha
Helix 20	AC2	B	303	355	Right-handed alpha
Helix 21	AC3	B	359	436	Right-handed alpha
Helix 22	AC4	B	442	519	Right-handed alpha
Helix 23	AC5	C	188	203	Right-handed alpha
Helix 24	AC6	C	225	229	Right-handed 310
Helix 25	AC7	C	233	250	Right-handed alpha
Helix 26	AC8	C	257	266	Right-handed alpha
Helix 27	AC9	C	271	275	Right-handed 310
Helix 28	AD1	C	278	280	Right-handed 310
Helix 29	AD2	C	281	296	Right-handed alpha
Helix 30	AD3	C	296	301	Right-handed alpha
Helix 31	AD4	C	303	355	Right-handed alpha
Helix 32	AD5	C	359	436	Right-handed alpha
Helix 33	AD6	C	442	519	Right-handed alpha
Helix 34	AD7	D	188	203	Right-handed alpha
Helix 35	AD8	D	225	229	Right-handed 310
Helix 36	AD9	D	233	250	Right-handed alpha
Helix 37	AE1	D	257	266	Right-handed alpha
Helix 38	AE2	D	271	275	Right-handed 310
Helix 39	AE3	D	278	280	Right-handed 310
Helix 40	AE4	D	281	296	Right-handed alpha
Helix 41	AE5	D	296	301	Right-handed alpha
Helix 42	AE6	D	303	355	Right-handed alpha
Helix 43	AE7	D	359	436	Right-handed alpha
Helix 44	AE8	D	442	519	Right-handed alpha
Helix 45	AE9	E	188	203	Right-handed alpha
Helix 46	AF1	E	225	229	Right-handed 310
Helix 47	AF2	E	233	250	Right-handed alpha
Helix 48	AF3	E	257	266	Right-handed alpha
Helix 49	AF4	E	271	275	Right-handed 310
Helix 50	AF5	E	278	280	Right-handed 310
Helix 51	AF6	E	281	296	Right-handed alpha
Helix 52	AF7	E	296	301	Right-handed alpha
Helix 53	AF8	E	303	355	Right-handed alpha
Helix 54	AF9	E	359	436	Right-handed alpha
Helix 55	AG1	E	442	519	Right-handed alpha
Helix 56	AG2	F	188	203	Right-handed alpha
Helix 57	AG3	F	225	229	Right-handed 310
Helix 58	AG4	F	233	250	Right-handed alpha
Helix 59	AG5	F	257	266	Right-handed alpha
Helix 60	AG6	F	271	275	Right-handed 310
Helix 61	AG7	F	278	280	Right-handed 310
Helix 62	AG8	F	281	296	Right-handed alpha
Helix 63	AG9	F	296	301	Right-handed alpha
Helix 64	AH1	F	303	355	Right-handed alpha
Helix 65	AH2	F	359	436	Right-handed alpha
Helix 66	AH3	F	442	519	Right-handed alpha
Helix 67	AH4	G	188	203	Right-handed alpha
Helix 68	AH5	G	225	229	Right-handed 310
Helix 69	AH6	G	233	250	Right-handed alpha
Helix 70	AH7	G	257	266	Right-handed alpha
Helix 71	AH8	G	271	275	Right-handed 310
Helix 72	AH9	G	278	280	Right-handed 310
Helix 73	AI1	G	281	296	Right-handed alpha
Helix 74	AI2	G	296	301	Right-handed alpha
Helix 75	AI3	G	303	355	Right-handed alpha
Helix 76	AI4	G	359	436	Right-handed alpha
Helix 77	AI5	G	442	519	Right-handed alpha
Helix 78	AI6	H	188	203	Right-handed alpha
Helix 79	AI7	H	225	229	Right-handed 310
Helix 80	AI8	H	233	250	Right-handed alpha
Helix 81	AI9	H	257	266	Right-handed alpha
Helix 82	AJ1	H	271	275	Right-handed 310
Helix 83	AJ2	H	278	280	Right-handed 310
Helix 84	AJ3	H	281	296	Right-handed alpha
Helix 85	AJ4	H	296	301	Right-handed alpha
Helix 86	AJ5	H	303	355	Right-handed alpha
Helix 87	AJ6	H	359	436	Right-handed alpha
Helix 88	AJ7	H	442	519	Right-handed alpha
Helix 89	AJ8	I	188	203	Right-handed alpha
Helix 90	AJ9	I	225	229	Right-handed 310
Helix 91	AK1	I	233	250	Right-handed alpha
Helix 92	AK2	I	257	266	Right-handed alpha
Helix 93	AK3	I	271	275	Right-handed 310
Helix 94	AK4	I	278	280	Right-handed 310
Helix 95	AK5	I	281	296	Right-handed alpha
Helix 96	AK6	I	296	301	Right-handed alpha
Helix 97	AK7	I	303	355	Right-handed alpha
Helix 98	AK8	I	359	436	Right-handed alpha
Helix 99	AK9	I	442	519	Right-handed alpha
Helix 100	AL1	J	188	203	Right-handed alpha
Helix 101	AL2	J	225	229	Right-handed 310
Helix 102	AL3	J	233	250	Right-handed alpha
Helix 103	AL4	J	257	266	Right-handed alpha
Helix 104	AL5	J	271	275	Right-handed 310
Helix 105	AL6	J	278	280	Right-handed 310
Helix 106	AL7	J	281	296	Right-handed alpha
Helix 107	AL8	J	296	301	Right-handed alpha
Helix 108	AL9	J	303	355	Right-handed alpha
Helix 109	AM1	J	359	436	Right-handed alpha
Helix 110	AM2	J	442	519	Right-handed alpha
Helix 111	AM3	K	188	203	Right-handed alpha
Helix 112	AM4	K	225	229	Right-handed 310
Helix 113	AM5	K	233	250	Right-handed alpha
Helix 114	AM6	K	257	266	Right-handed alpha
Helix 115	AM7	K	271	275	Right-handed 310
Helix 116	AM8	K	278	280	Right-handed 310
Helix 117	AM9	K	281	296	Right-handed alpha
Helix 118	AN1	K	296	301	Right-handed alpha
Helix 119	AN2	K	303	355	Right-handed alpha
Helix 120	AN3	K	359	436	Right-handed alpha
Helix 121	AN4	K	442	519	Right-handed alpha
Helix 122	AN5	L	188	203	Right-handed alpha
Helix 123	AN6	L	225	229	Right-handed 310
Helix 124	AN7	L	233	250	Right-handed alpha
Helix 125	AN8	L	257	266	Right-handed alpha
Helix 126	AN9	L	271	275	Right-handed 310
Helix 127	AO1	L	278	280	Right-handed 310
Helix 128	AO2	L	281	296	Right-handed alpha
Helix 129	AO3	L	296	301	Right-handed alpha
Helix 130	AO4	L	303	355	Right-handed alpha
Helix 131	AO5	L	359	436	Right-handed alpha
Helix 132	AO6	L	442	519	Right-handed alpha
Helix 133	AO7	M	188	203	Right-handed alpha
Helix 134	AO8	M	225	229	Right-handed 310
Helix 135	AO9	M	233	250	Right-handed alpha
Helix 136	AP1	M	257	266	Right-handed alpha
Helix 137	AP2	M	271	275	Right-handed 310
Helix 138	AP3	M	278	280	Right-handed 310
Helix 139	AP4	M	281	296	Right-handed alpha
Helix 140	AP5	M	296	301	Right-handed alpha
Helix 141	AP6	M	303	355	Right-handed alpha
Helix 142	AP7	M	359	436	Right-handed alpha
Helix 143	AP8	M	442	519	Right-handed alpha
Helix 144	AP9	N	188	203	Right-handed alpha
Helix 145	AQ1	N	225	229	Right-handed 310
Helix 146	AQ2	N	233	250	Right-handed alpha
Helix 147	AQ3	N	257	266	Right-handed alpha
Helix 148	AQ4	N	271	275	Right-handed 310
Helix 149	AQ5	N	278	280	Right-handed 310
Helix 150	AQ6	N	281	296	Right-handed alpha
Helix 151	AQ7	N	296	301	Right-handed alpha
Helix 152	AQ8	N	303	355	Right-handed alpha
Helix 153	AQ9	N	359	436	Right-handed alpha
Helix 154	AR1	N	442	519	Right-handed alpha
Helix 155	AR2	O	188	203	Right-handed alpha
Helix 156	AR3	O	225	229	Right-handed 310
Helix 157	AR4	O	233	250	Right-handed alpha
Helix 158	AR5	O	257	266	Right-handed alpha
Helix 159	AR6	O	271	275	Right-handed 310
Helix 160	AR7	O	278	280	Right-handed 310
Helix 161	AR8	O	281	296	Right-handed alpha
Helix 162	AR9	O	296	301	Right-handed alpha
Helix 163	AS1	O	303	355	Right-handed alpha
Helix 164	AS2	O	359	436	Right-handed alpha
Helix 165	AS3	O	442	519	Right-handed alpha
Helix 166	AS4	P	188	203	Right-handed alpha
Helix 167	AS5	P	225	229	Right-handed 310
Helix 168	AS6	P	233	250	Right-handed alpha
Helix 169	AS7	P	257	266	Right-handed alpha
Helix 170	AS8	P	271	275	Right-handed 310
Helix 171	AS9	P	278	280	Right-handed 310
Helix 172	AT1	P	281	296	Right-handed alpha
Helix 173	AT2	P	296	301	Right-handed alpha
Helix 174	AT3	P	303	355	Right-handed alpha
Helix 175	AT4	P	359	436	Right-handed alpha
Helix 176	AT5	P	442	519	Right-handed alpha

There are 16 sheets in PDB entry 7D6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	168	first strand
Strand 2	A	180	185	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	168	first strand
Strand 2	B	180	185	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	168	first strand
Strand 2	C	180	185	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	168	first strand
Strand 2	D	180	185	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	168	first strand
Strand 2	E	180	185	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	168	first strand
Strand 2	F	180	185	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	168	first strand
Strand 2	G	180	185	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	163	168	first strand
Strand 2	H	180	185	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	163	168	first strand
Strand 2	I	180	185	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	163	168	first strand
Strand 2	J	180	185	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	163	168	first strand
Strand 2	K	180	185	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	163	168	first strand
Strand 2	L	180	185	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	163	168	first strand
Strand 2	M	180	185	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	163	168	first strand
Strand 2	N	180	185	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	163	168	first strand
Strand 2	O	180	185	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	163	168	first strand
Strand 2	P	180	185	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D6D

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D6D