Analysis of interatomic Contacts of Structural Units in PDB entry:
7D6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D6M entry

There are 2 chains in PDB entry 7D6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 6GLY 265
B
 MET 6GLY 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7D6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 19Right-handed alpha
Helix 2
AA2
A
20 29Right-handed alpha
Helix 3
AA3
A
37 46Right-handed alpha
Helix 4
AA4
A
57 68Right-handed alpha
Helix 5
AA5
A
85 93Right-handed alpha
Helix 6
AA6
A
120 122Right-handed 310
Helix 7
AA7
A
153 175Right-handed alpha
Helix 8
AA8
A
189 204Right-handed alpha
Helix 9
AA9
A
229 245Right-handed alpha
Helix 10
AB1
B
7 19Right-handed alpha
Helix 11
AB2
B
21 28Right-handed alpha
Helix 12
AB3
B
37 46Right-handed alpha
Helix 13
AB4
B
57 69Right-handed alpha
Helix 14
AB5
B
85 93Right-handed alpha
Helix 15
AB6
B
120 122Right-handed 310
Helix 16
AB7
B
153 175Right-handed alpha
Helix 17
AB8
B
189 204Right-handed alpha
Helix 18
AB9
B
229 244Right-handed alpha
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There are 4 sheets in PDB entry 7D6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
252 255parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
97 104parallel
Strand 3
A
75 80parallel
Strand 4
A
142 145parallel
Strand 5
A
179 184parallel
Strand 6
A
220 223anti-parallel
Strand 7
A
206 208anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
252 255parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 128first strand
Strand 2
B
97 104parallel
Strand 3
B
75 80parallel
Strand 4
B
142 145parallel
Strand 5
B
179 184parallel
Strand 6
B
220 223anti-parallel
Strand 7
B
206 208anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il