Analysis of interatomic Contacts of Structural Units in PDB entry:
7D6V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D6V entry

There are 3 chains in PDB entry 7D6V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 4	PRO 631
B	ALA 2	VAL 240
C	ALA 10	GLY 273

There are 43 helices in PDB entry 7D6V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	31	Right-handed alpha
Helix 2	AA2	A	45	50	Right-handed 310
Helix 3	AA3	A	66	77	Right-handed alpha
Helix 4	AA4	A	83	103	Right-handed alpha
Helix 5	AA5	A	135	160	Right-handed alpha
Helix 6	AA6	A	212	216	Right-handed 310
Helix 7	AA7	A	229	237	Right-handed alpha
Helix 8	AA8	A	321	335	Right-handed alpha
Helix 9	AA9	A	353	361	Right-handed alpha
Helix 10	AB1	A	361	373	Right-handed alpha
Helix 11	AB2	A	411	413	Right-handed 310
Helix 12	AB3	A	426	449	Right-handed alpha
Helix 13	AB4	A	457	470	Right-handed alpha
Helix 14	AB5	A	471	473	Right-handed 310
Helix 15	AB6	A	480	496	Right-handed alpha
Helix 16	AB7	A	501	519	Right-handed alpha
Helix 17	AB8	A	520	522	Right-handed 310
Helix 18	AB9	A	531	557	Right-handed alpha
Helix 19	AC1	A	614	619	Right-handed alpha
Helix 20	AC2	B	32	44	Right-handed alpha
Helix 21	AC3	B	74	76	Right-handed 310
Helix 22	AC4	B	106	113	Right-handed alpha
Helix 23	AC5	B	125	129	Right-handed 310
Helix 24	AC6	B	132	143	Right-handed alpha
Helix 25	AC7	B	149	155	Right-handed alpha
Helix 26	AC8	B	155	160	Right-handed alpha
Helix 27	AC9	B	161	165	Right-handed 310
Helix 28	AD1	B	170	182	Right-handed alpha
Helix 29	AD2	B	190	197	Right-handed alpha
Helix 30	AD3	B	199	203	Right-handed 310
Helix 31	AD4	B	218	223	Right-handed alpha
Helix 32	AD5	B	223	236	Right-handed alpha
Helix 33	AD6	C	32	56	Right-handed alpha
Helix 34	AD7	C	69	72	Right-handed 310
Helix 35	AD8	C	103	113	Right-handed alpha
Helix 36	AD9	C	114	125	Right-handed alpha
Helix 37	AE1	C	146	151	Right-handed alpha
Helix 38	AE2	C	154	176	Right-handed alpha
Helix 39	AE3	C	187	205	Right-handed alpha
Helix 40	AE4	C	206	214	Right-handed alpha
Helix 41	AE5	C	219	222	Right-handed 310
Helix 42	AE6	C	223	238	Right-handed alpha
Helix 43	AE7	C	239	265	Right-handed alpha

There are 11 sheets in PDB entry 7D6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	197	200	parallel
Strand 3	A	184	191	anti-parallel
Strand 4	A	172	179	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	34	37	parallel
Strand 3	A	11	14	parallel
Strand 4	A	204	206	parallel
Strand 5	A	408	409	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	129	130	anti-parallel
Strand 3	A	118	119	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	A	393	395	anti-parallel
Strand 3	A	415	416	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	253	first strand
Strand 2	A	383	390	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	500	first strand
Strand 2	A	565	566	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	582	585	first strand
Strand 2	A	594	597	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	27	first strand
Strand 2	B	4	14	anti-parallel
Strand 3	B	86	87	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	65	first strand
Strand 2	B	70	72	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	B	102	103	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	66	67	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D6V

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D6V