Analysis of interatomic Contacts of Structural Units in PDB entry:
7D78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D78 entry

There are 2 chains in PDB entry 7D78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 SER 6GLY 302
A
 SER 6VAL 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7D78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
47 58Right-handed alpha
Helix 2
AA2
D
82 99Right-handed alpha
Helix 3
AA3
D
114 127Right-handed alpha
Helix 4
AA4
D
144 146Right-handed 310
Helix 5
AA5
D
147 164Right-handed alpha
Helix 6
AA6
D
189 201Right-handed alpha
Helix 7
AA7
D
217 225Right-handed alpha
Helix 8
AA8
D
226 232Right-handed alpha
Helix 9
AA9
D
251 262Right-handed alpha
Helix 10
AB1
D
284 300Right-handed alpha
Helix 11
AB2
A
47 58Right-handed alpha
Helix 12
AB3
A
82 100Right-handed alpha
Helix 13
AB4
A
114 127Right-handed alpha
Helix 14
AB5
A
144 146Right-handed 310
Helix 15
AB6
A
147 164Right-handed alpha
Helix 16
AB7
A
189 201Right-handed alpha
Helix 17
AB8
A
202 206Right-handed 310
Helix 18
AB9
A
217 225Right-handed alpha
Helix 19
AC1
A
226 232Right-handed alpha
Helix 20
AC2
A
251 262Right-handed alpha
Helix 21
AC3
A
284 300Right-handed alpha
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There are 4 sheets in PDB entry 7D78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 13first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
61 66anti-parallel
Strand 4
D
31 37parallel
Strand 5
D
103 113parallel
Strand 6
D
130 136parallel
Strand 7
D
239 244parallel
Strand 8
D
266 271parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
170 171first strand
Strand 2
D
214 215anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
61 65anti-parallel
Strand 4
A
31 37parallel
Strand 5
A
103 113parallel
Strand 6
A
130 136parallel
Strand 7
A
239 244parallel
Strand 8
A
266 271parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
214 215anti-parallel
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