Analysis of interatomic Contacts of Structural Units in PDB entry:
7D7C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D7C entry

There are 7 chains in PDB entry 7D7C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 8	VAL 232
B	VAL 5	ASP 233
C	VAL 2	ASP 1341
D	GLU 16	ARG 1373
T	G 1	T 31
F	TYR 10	THR 153
N	A 22	C 52

There are 99 helices in PDB entry 7D7C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	50	Right-handed alpha
Helix 2	AA2	A	77	86	Right-handed alpha
Helix 3	AA3	A	111	115	Right-handed 310
Helix 4	AA4	A	212	229	Right-handed alpha
Helix 5	AA5	B	34	50	Right-handed alpha
Helix 6	AA6	B	77	87	Right-handed alpha
Helix 7	AA7	B	113	115	Right-handed 310
Helix 8	AA8	B	154	158	Right-handed 310
Helix 9	AA9	B	212	229	Right-handed alpha
Helix 10	AB1	C	28	37	Right-handed alpha
Helix 11	AB2	C	48	57	Right-handed alpha
Helix 12	AB3	C	81	89	Right-handed alpha
Helix 13	AB4	C	206	212	Right-handed alpha
Helix 14	AB5	C	216	225	Right-handed alpha
Helix 15	AB6	C	242	247	Right-handed 310
Helix 16	AB7	C	270	281	Right-handed alpha
Helix 17	AB8	C	318	328	Right-handed alpha
Helix 18	AB9	C	346	354	Right-handed alpha
Helix 19	AC1	C	358	371	Right-handed alpha
Helix 20	AC2	C	377	391	Right-handed alpha
Helix 21	AC3	C	398	409	Right-handed alpha
Helix 22	AC4	C	421	438	Right-handed alpha
Helix 23	AC5	C	455	478	Right-handed alpha
Helix 24	AC6	C	479	481	Right-handed 310
Helix 25	AC7	C	495	508	Right-handed alpha
Helix 26	AC8	C	521	527	Right-handed alpha
Helix 27	AC9	C	610	614	Right-handed 310
Helix 28	AD1	C	676	687	Right-handed alpha
Helix 29	AD2	C	705	710	Right-handed alpha
Helix 30	AD3	C	858	863	Right-handed alpha
Helix 31	AD4	C	943	980	Right-handed alpha
Helix 32	AD5	C	1005	1038	Right-handed alpha
Helix 33	AD6	C	1081	1085	Right-handed 310
Helix 34	AD7	C	1101	1106	Right-handed alpha
Helix 35	AD8	C	1109	1134	Right-handed alpha
Helix 36	AD9	C	1137	1151	Right-handed alpha
Helix 37	AE1	C	1160	1164	Right-handed 310
Helix 38	AE2	C	1167	1177	Right-handed alpha
Helix 39	AE3	C	1191	1202	Right-handed alpha
Helix 40	AE4	C	1238	1243	Right-handed alpha
Helix 41	AE5	C	1271	1281	Right-handed alpha
Helix 42	AE6	C	1284	1290	Right-handed alpha
Helix 43	AE7	C	1297	1310	Right-handed alpha
Helix 44	AE8	C	1321	1331	Right-handed alpha
Helix 45	AE9	D	26	34	Right-handed alpha
Helix 46	AF1	D	77	81	Right-handed 310
Helix 47	AF2	D	95	100	Right-handed 310
Helix 48	AF3	D	114	117	Right-handed 310
Helix 49	AF4	D	131	140	Right-handed alpha
Helix 50	AF5	D	161	173	Right-handed alpha
Helix 51	AF6	D	181	191	Right-handed alpha
Helix 52	AF7	D	194	208	Right-handed alpha
Helix 53	AF8	D	211	230	Right-handed alpha
Helix 54	AF9	D	233	236	Right-handed 310
Helix 55	AG1	D	246	250	Right-handed 310
Helix 56	AG2	D	264	283	Right-handed alpha
Helix 57	AG3	D	288	308	Right-handed alpha
Helix 58	AG4	D	327	331	Right-handed 310
Helix 59	AG5	D	336	342	Right-handed alpha
Helix 60	AG6	D	370	377	Right-handed alpha
Helix 61	AG7	D	377	389	Right-handed alpha
Helix 62	AG8	D	393	403	Right-handed alpha
Helix 63	AG9	D	407	416	Right-handed alpha
Helix 64	AH1	D	417	419	Right-handed 310
Helix 65	AH2	D	430	432	Right-handed 310
Helix 66	AH3	D	473	483	Right-handed alpha
Helix 67	AH4	D	504	514	Right-handed alpha
Helix 68	AH5	D	529	539	Right-handed alpha
Helix 69	AH6	D	574	581	Right-handed alpha
Helix 70	AH7	D	589	594	Right-handed alpha
Helix 71	AH8	D	597	613	Right-handed alpha
Helix 72	AH9	D	614	636	Right-handed alpha
Helix 73	AI1	D	649	670	Right-handed alpha
Helix 74	AI2	D	674	703	Right-handed alpha
Helix 75	AI3	D	720	728	Right-handed alpha
Helix 76	AI4	D	733	741	Right-handed alpha
Helix 77	AI5	D	768	805	Right-handed alpha
Helix 78	AI6	D	834	839	Right-handed alpha
Helix 79	AI7	D	865	875	Right-handed alpha
Helix 80	AI8	D	895	900	Right-handed alpha
Helix 81	AI9	D	914	925	Right-handed alpha
Helix 82	AJ1	D	926	930	Right-handed 310
Helix 83	AJ2	D	1069	1074	Right-handed alpha
Helix 84	AJ3	D	1137	1147	Right-handed alpha
Helix 85	AJ4	D	1216	1225	Right-handed alpha
Helix 86	AJ5	D	1225	1241	Right-handed alpha
Helix 87	AJ6	D	1250	1261	Right-handed alpha
Helix 88	AJ7	D	1282	1293	Right-handed alpha
Helix 89	AJ8	D	1308	1315	Right-handed alpha
Helix 90	AJ9	D	1318	1325	Right-handed alpha
Helix 91	AK1	D	1327	1339	Right-handed alpha
Helix 92	AK2	D	1360	1373	Right-handed alpha
Helix 93	AK3	F	13	28	Right-handed alpha
Helix 94	AK4	F	40	55	Right-handed alpha
Helix 95	AK5	F	64	83	Right-handed alpha
Helix 96	AK6	F	94	125	Right-handed alpha
Helix 97	AK7	F	137	142	Right-handed alpha
Helix 98	AK8	F	142	150	Right-handed alpha
Helix 99	AK9	F	151	153	Right-handed 310

There are 46 sheets in PDB entry 7D7C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	18	first strand
Strand 2	A	23	31	anti-parallel
Strand 3	A	199	207	anti-parallel
Strand 4	A	180	189	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	149	150	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	61	first strand
Strand 2	A	140	147	anti-parallel
Strand 3	A	97	104	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	131	133	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	23	31	anti-parallel
Strand 3	B	198	207	anti-parallel
Strand 4	B	180	190	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	142	149	anti-parallel
Strand 3	B	53	61	anti-parallel
Strand 4	B	171	172	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	122	123	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	139	140	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	129	133	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	105	anti-parallel
Strand 4	C	114	128	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	142	145	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	453	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	530	531	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	158	first strand
Strand 2	C	173	177	anti-parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	194	198	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	230	first strand
Strand 2	C	333	335	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	284	285	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	297	first strand
Strand 2	C	315	316	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	599	606	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	652	653	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	616	617	first strand
Strand 2	C	634	637	anti-parallel
Strand 3	C	643	645	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	748	751	first strand
Strand 2	C	732	736	anti-parallel
Strand 3	C	722	726	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1065	1067	first strand
Strand 2	C	1073	1079	anti-parallel
Strand 3	C	816	818	parallel
Strand 4	C	1096	1098	anti-parallel
Strand 5	C	798	804	parallel
Strand 6	C	1225	1232	anti-parallel
Strand 7	C	1209	1210	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	832	first strand
Strand 2	C	1056	1058	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	835	839	first strand
Strand 2	C	1048	1053	anti-parallel
Strand 3	C	931	935	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	842	843	first strand
Strand 2	C	846	847	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	876	877	first strand
Strand 2	C	926	927	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1087	1088	first strand
Strand 2	C	1212	1213	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	356	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	424	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	356	anti-parallel
Strand 3	D	446	448	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1268	1270	first strand
Strand 2	D	345	347	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1339	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	1341	1342	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	112	first strand
Strand 2	D	238	244	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	159	160	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	527	first strand
Strand 2	D	547	556	parallel
Strand 3	D	564	573	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	825	826	first strand
Strand 2	D	831	833	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	848	849	first strand
Strand 2	D	856	858	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	949	951	first strand
Strand 2	D	1016	1019	anti-parallel
Strand 3	D	1001	1003	anti-parallel
Strand 4	D	973	975	anti-parallel
Strand 5	D	965	967	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	958	961	first strand
Strand 2	D	981	985	anti-parallel
Strand 3	D	991	996	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1078	1079	first strand
Strand 2	D	1098	1099	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1162	1165	first strand
Strand 2	D	1173	1178	anti-parallel
Strand 3	D	1186	1190	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1279	1281	first strand
Strand 2	D	1263	1268	anti-parallel
Strand 3	D	1301	1304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D7C

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D7C