Analysis of interatomic Contacts of Structural Units in PDB entry:
7D7E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D7E entry

There are 4 chains in PDB entry 7D7E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 94	LYS 575
C	GLU 94	VAL 567
D	GLU 94	GLY 573
A	GLY 1660	LYS 2110

There are 60 helices in PDB entry 7D7E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	100	120	Right-handed alpha
Helix 2	AA2	B	125	138	Right-handed alpha
Helix 3	AA3	B	153	161	Right-handed alpha
Helix 4	AA4	B	165	170	Right-handed alpha
Helix 5	AA5	B	187	191	Right-handed 310
Helix 6	AA6	B	249	254	Right-handed alpha
Helix 7	AA7	B	277	283	Right-handed alpha
Helix 8	AA8	B	283	291	Right-handed alpha
Helix 9	AA9	B	348	377	Right-handed alpha
Helix 10	AB1	B	379	383	Right-handed 310
Helix 11	AB2	B	385	421	Right-handed alpha
Helix 12	AB3	B	428	453	Right-handed alpha
Helix 13	AB4	B	454	456	Right-handed 310
Helix 14	AB5	B	464	471	Right-handed alpha
Helix 15	AB6	B	473	499	Right-handed alpha
Helix 16	AB7	B	508	521	Right-handed alpha
Helix 17	AB8	B	525	533	Right-handed alpha
Helix 18	AB9	B	535	575	Right-handed alpha
Helix 19	AC1	C	101	120	Right-handed alpha
Helix 20	AC2	C	126	138	Right-handed alpha
Helix 21	AC3	C	153	161	Right-handed alpha
Helix 22	AC4	C	277	291	Right-handed alpha
Helix 23	AC5	C	351	376	Right-handed alpha
Helix 24	AC6	C	379	384	Right-handed 310
Helix 25	AC7	C	385	421	Right-handed alpha
Helix 26	AC8	C	428	452	Right-handed alpha
Helix 27	AC9	C	453	456	Right-handed 310
Helix 28	AD1	C	466	473	Right-handed alpha
Helix 29	AD2	C	474	499	Right-handed alpha
Helix 30	AD3	C	508	521	Right-handed alpha
Helix 31	AD4	C	525	533	Right-handed alpha
Helix 32	AD5	C	535	564	Right-handed alpha
Helix 33	AD6	D	100	115	Right-handed alpha
Helix 34	AD7	D	123	125	Right-handed 310
Helix 35	AD8	D	126	138	Right-handed alpha
Helix 36	AD9	D	153	162	Right-handed alpha
Helix 37	AE1	D	165	170	Right-handed alpha
Helix 38	AE2	D	189	191	Right-handed 310
Helix 39	AE3	D	278	291	Right-handed alpha
Helix 40	AE4	D	346	373	Right-handed alpha
Helix 41	AE5	D	385	421	Right-handed alpha
Helix 42	AE6	D	428	452	Right-handed alpha
Helix 43	AE7	D	452	457	Right-handed alpha
Helix 44	AE8	D	460	465	Right-handed alpha
Helix 45	AE9	D	465	471	Right-handed alpha
Helix 46	AF1	D	477	499	Right-handed alpha
Helix 47	AF2	D	508	521	Right-handed alpha
Helix 48	AF3	D	525	533	Right-handed alpha
Helix 49	AF4	D	535	572	Right-handed alpha
Helix 50	AF5	A	1661	1678	Right-handed alpha
Helix 51	AF6	A	1681	1695	Right-handed alpha
Helix 52	AF7	A	1715	1720	Right-handed alpha
Helix 53	AF8	A	1823	1836	Right-handed alpha
Helix 54	AF9	A	1893	1920	Right-handed alpha
Helix 55	AG1	A	1928	1965	Right-handed alpha
Helix 56	AG2	A	1972	2001	Right-handed alpha
Helix 57	AG3	A	2019	2043	Right-handed alpha
Helix 58	AG4	A	2052	2066	Right-handed alpha
Helix 59	AG5	A	2071	2077	Right-handed alpha
Helix 60	AG6	A	2079	2107	Right-handed alpha

There are 9 sheets in PDB entry 7D7E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	298	309	anti-parallel
Strand 3	B	199	204	anti-parallel
Strand 4	B	270	273	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	298	309	anti-parallel
Strand 3	B	314	323	anti-parallel
Strand 4	B	331	339	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	259	first strand
Strand 2	B	264	265	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	192	204	anti-parallel
Strand 3	C	272	273	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	192	204	anti-parallel
Strand 3	C	298	309	anti-parallel
Strand 4	C	314	323	anti-parallel
Strand 5	C	333	339	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	259	first strand
Strand 2	C	264	265	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	192	203	anti-parallel
Strand 3	D	270	273	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	192	203	anti-parallel
Strand 3	D	300	309	anti-parallel
Strand 4	D	314	323	anti-parallel
Strand 5	D	331	339	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1815	1818	first strand
Strand 2	A	1732	1744	anti-parallel
Strand 3	A	1843	1854	anti-parallel
Strand 4	A	1859	1869	anti-parallel
Strand 5	A	1875	1884	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D7E

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D7E