Analysis of interatomic Contacts of Structural Units in PDB entry:
7D7F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D7F entry

There are 4 chains in PDB entry 7D7F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 94	LYS 575
C	GLU 94	VAL 567
D	GLU 94	GLY 573
A	GLN 1664	GLY 2109

There are 66 helices in PDB entry 7D7F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	101	120	Right-handed alpha
Helix 2	AA2	B	121	122	Right-handed 310
Helix 3	AA3	B	123	125	Right-handed 310
Helix 4	AA4	B	126	138	Right-handed alpha
Helix 5	AA5	B	153	163	Right-handed alpha
Helix 6	AA6	B	163	170	Right-handed alpha
Helix 7	AA7	B	189	191	Right-handed 310
Helix 8	AA8	B	213	217	Right-handed 310
Helix 9	AA9	B	249	254	Right-handed alpha
Helix 10	AB1	B	277	291	Right-handed alpha
Helix 11	AB2	B	348	368	Right-handed alpha
Helix 12	AB3	B	371	377	Right-handed alpha
Helix 13	AB4	B	379	383	Right-handed 310
Helix 14	AB5	B	385	421	Right-handed alpha
Helix 15	AB6	B	428	452	Right-handed alpha
Helix 16	AB7	B	466	470	Right-handed 310
Helix 17	AB8	B	476	499	Right-handed alpha
Helix 18	AB9	B	508	521	Right-handed alpha
Helix 19	AC1	B	525	533	Right-handed alpha
Helix 20	AC2	B	535	575	Right-handed alpha
Helix 21	AC3	C	100	121	Right-handed alpha
Helix 22	AC4	C	125	139	Right-handed alpha
Helix 23	AC5	C	147	151	Right-handed 310
Helix 24	AC6	C	153	170	Right-handed alpha
Helix 25	AC7	C	214	218	Right-handed 310
Helix 26	AC8	C	277	291	Right-handed alpha
Helix 27	AC9	C	346	373	Right-handed alpha
Helix 28	AD1	C	379	386	Right-handed 310
Helix 29	AD2	C	387	421	Right-handed alpha
Helix 30	AD3	C	428	457	Right-handed alpha
Helix 31	AD4	C	464	473	Right-handed alpha
Helix 32	AD5	C	475	499	Right-handed alpha
Helix 33	AD6	C	503	507	Right-handed 310
Helix 34	AD7	C	508	521	Right-handed alpha
Helix 35	AD8	C	525	533	Right-handed alpha
Helix 36	AD9	C	535	561	Right-handed alpha
Helix 37	AE1	D	101	117	Right-handed alpha
Helix 38	AE2	D	125	140	Right-handed alpha
Helix 39	AE3	D	147	151	Right-handed 310
Helix 40	AE4	D	153	162	Right-handed alpha
Helix 41	AE5	D	163	170	Right-handed alpha
Helix 42	AE6	D	277	291	Right-handed alpha
Helix 43	AE7	D	346	375	Right-handed alpha
Helix 44	AE8	D	384	421	Right-handed alpha
Helix 45	AE9	D	428	452	Right-handed alpha
Helix 46	AF1	D	453	456	Right-handed 310
Helix 47	AF2	D	465	473	Right-handed alpha
Helix 48	AF3	D	477	499	Right-handed alpha
Helix 49	AF4	D	508	522	Right-handed alpha
Helix 50	AF5	D	525	533	Right-handed alpha
Helix 51	AF6	D	535	572	Right-handed alpha
Helix 52	AF7	A	1665	1677	Right-handed alpha
Helix 53	AF8	A	1681	1695	Right-handed alpha
Helix 54	AF9	A	1697	1701	Right-handed 310
Helix 55	AG1	A	1706	1715	Right-handed alpha
Helix 56	AG2	A	1715	1720	Right-handed alpha
Helix 57	AG3	A	1823	1836	Right-handed alpha
Helix 58	AG4	A	1896	1920	Right-handed alpha
Helix 59	AG5	A	1928	1965	Right-handed alpha
Helix 60	AG6	A	1972	2004	Right-handed alpha
Helix 61	AG7	A	2018	2023	Right-handed alpha
Helix 62	AG8	A	2024	2044	Right-handed alpha
Helix 63	AG9	A	2047	2051	Right-handed 310
Helix 64	AH1	A	2052	2066	Right-handed alpha
Helix 65	AH2	A	2071	2077	Right-handed alpha
Helix 66	AH3	A	2077	2107	Right-handed alpha

There are 12 sheets in PDB entry 7D7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	457	458	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	192	194	anti-parallel
Strand 3	B	298	309	anti-parallel
Strand 4	B	199	204	anti-parallel
Strand 5	B	270	273	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	192	194	anti-parallel
Strand 3	B	298	309	anti-parallel
Strand 4	B	314	323	anti-parallel
Strand 5	B	331	339	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	259	first strand
Strand 2	B	264	265	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	192	194	anti-parallel
Strand 3	C	298	309	anti-parallel
Strand 4	C	199	204	anti-parallel
Strand 5	C	270	273	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	192	194	anti-parallel
Strand 3	C	298	309	anti-parallel
Strand 4	C	314	323	anti-parallel
Strand 5	C	331	339	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	259	first strand
Strand 2	C	264	265	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	192	194	anti-parallel
Strand 3	D	298	309	anti-parallel
Strand 4	D	199	204	anti-parallel
Strand 5	D	270	273	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	192	194	anti-parallel
Strand 3	D	298	309	anti-parallel
Strand 4	D	314	323	anti-parallel
Strand 5	D	331	339	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1733	1734	first strand
Strand 2	A	1843	1854	anti-parallel
Strand 3	A	1739	1744	anti-parallel
Strand 4	A	1815	1818	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1733	1734	first strand
Strand 2	A	1843	1854	anti-parallel
Strand 3	A	1859	1869	anti-parallel
Strand 4	A	1875	1884	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1803	1804	first strand
Strand 2	A	1809	1810	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D7F

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D7F