Analysis of interatomic Contacts of Structural Units in PDB entry:
7D7Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D7Q entry

There are 2 chains in PDB entry 7D7Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 43HIS 320
B
 ILE 44TRP 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7D7Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 73Right-handed alpha
Helix 2
AA2
A
75 86Right-handed alpha
Helix 3
AA3
A
87 113Right-handed alpha
Helix 4
AA4
A
119 143Right-handed alpha
Helix 5
AA5
A
159 180Right-handed alpha
Helix 6
AA6
A
183 207Right-handed alpha
Helix 7
AA7
A
208 238Right-handed alpha
Helix 8
AA8
A
249 265Right-handed alpha
Helix 9
AA9
A
265 276Right-handed alpha
Helix 10
AB1
A
280 320Right-handed alpha
Helix 11
AB2
B
48 73Right-handed alpha
Helix 12
AB3
B
75 86Right-handed alpha
Helix 13
AB4
B
88 113Right-handed alpha
Helix 14
AB5
B
117 143Right-handed alpha
Helix 15
AB6
B
159 180Right-handed alpha
Helix 16
AB7
B
183 203Right-handed alpha
Helix 17
AB8
B
208 236Right-handed alpha
Helix 18
AB9
B
249 265Right-handed alpha
Helix 19
AC1
B
265 277Right-handed alpha
Helix 20
AC2
B
280 331Right-handed alpha
Helix 21
AC3
B
343 353Right-handed alpha
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There are 2 sheets in PDB entry 7D7Q. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
156 158anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
156 157anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il