Analysis of interatomic Contacts of Structural Units in PDB entry:
7D7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D7R entry

There are 2 chains in PDB entry 7D7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 241GLY 827
B
 ASP 241GLY 827
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 7D7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
241 253Right-handed alpha
Helix 2
AA2
A
261 297Right-handed alpha
Helix 3
AA3
A
306 321Right-handed alpha
Helix 4
AA4
A
322 353Right-handed alpha
Helix 5
AA5
A
357 363Right-handed alpha
Helix 6
AA6
A
365 390Right-handed alpha
Helix 7
AA7
A
391 409Right-handed alpha
Helix 8
AA8
A
412 459Right-handed alpha
Helix 9
AA9
A
459 466Right-handed alpha
Helix 10
AB1
A
471 523Right-handed alpha
Helix 11
AB2
A
529 542Right-handed alpha
Helix 12
AB3
A
543 549Right-handed alpha
Helix 13
AB4
A
550 568Right-handed alpha
Helix 14
AB5
A
627 637Right-handed alpha
Helix 15
AB6
A
659 664Right-handed alpha
Helix 16
AB7
A
680 686Right-handed alpha
Helix 17
AB8
A
692 704Right-handed alpha
Helix 18
AB9
A
705 712Right-handed alpha
Helix 19
AC1
A
728 744Right-handed alpha
Helix 20
AC2
A
758 774Right-handed alpha
Helix 21
AC3
A
807 815Right-handed alpha
Helix 22
AC4
A
816 827Right-handed alpha
Helix 23
AC5
B
242 253Right-handed alpha
Helix 24
AC6
B
261 297Right-handed alpha
Helix 25
AC7
B
306 321Right-handed alpha
Helix 26
AC8
B
322 353Right-handed alpha
Helix 27
AC9
B
357 363Right-handed alpha
Helix 28
AD1
B
365 390Right-handed alpha
Helix 29
AD2
B
391 409Right-handed alpha
Helix 30
AD3
B
412 459Right-handed alpha
Helix 31
AD4
B
459 466Right-handed alpha
Helix 32
AD5
B
471 523Right-handed alpha
Helix 33
AD6
B
529 542Right-handed alpha
Helix 34
AD7
B
543 549Right-handed alpha
Helix 35
AD8
B
550 568Right-handed alpha
Helix 36
AD9
B
627 637Right-handed alpha
Helix 37
AE1
B
659 664Right-handed alpha
Helix 38
AE2
B
680 686Right-handed alpha
Helix 39
AE3
B
692 704Right-handed alpha
Helix 40
AE4
B
705 712Right-handed alpha
Helix 41
AE5
B
728 744Right-handed alpha
Helix 42
AE6
B
758 774Right-handed alpha
Helix 43
AE7
B
807 815Right-handed alpha
Helix 44
AE8
B
816 827Right-handed alpha
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There are 6 sheets in PDB entry 7D7R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 613first strand
Strand 2
A
590 593anti-parallel
Strand 3
A
646 649anti-parallel
Strand 4
A
652 653anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 669first strand
Strand 2
A
747 751parallel
Strand 3
A
777 781parallel
Strand 4
A
618 622parallel
Strand 5
A
793 798parallel
Strand 6
A
801 806anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
678 679first strand
Strand 2
A
719 720anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
611 613first strand
Strand 2
B
590 593anti-parallel
Strand 3
B
646 649anti-parallel
Strand 4
B
652 653anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
666 669first strand
Strand 2
B
747 751parallel
Strand 3
B
777 781parallel
Strand 4
B
618 622parallel
Strand 5
B
793 798parallel
Strand 6
B
801 806anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
678 679first strand
Strand 2
B
719 720anti-parallel
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