Analysis of interatomic Contacts of Structural Units in PDB entry:
7D7S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D7S entry

There are 4 chains in PDB entry 7D7S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 74TYR 207
B
 VAL 74TYR 207
C
 VAL 84ASP 142
D
 VAL 84ILE 144
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7D7S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 98Right-handed alpha
Helix 2
AA2
A
107 123Right-handed alpha
Helix 3
AA3
A
191 195Right-handed 310
Helix 4
AA4
A
197 203Right-handed alpha
Helix 5
AA5
A
204 207Right-handed 310
Helix 6
AA6
B
84 98Right-handed alpha
Helix 7
AA7
B
107 123Right-handed alpha
Helix 8
AA8
B
191 195Right-handed 310
Helix 9
AA9
B
197 203Right-handed alpha
Helix 10
AB1
B
204 207Right-handed 310
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There are 4 sheets in PDB entry 7D7S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 151first strand
Strand 2
A
185 189anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 150first strand
Strand 2
B
186 189anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 134first strand
Strand 2
C
119 124anti-parallel
Strand 3
C
108 113anti-parallel
Strand 4
C
87 89anti-parallel
Strand 5
C
138 140anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
130 134first strand
Strand 2
D
119 124anti-parallel
Strand 3
D
108 113anti-parallel
Strand 4
D
86 89anti-parallel
Strand 5
D
138 140anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il