Analysis of interatomic Contacts of Structural Units in PDB entry:
7D84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D84 entry

There are 34 chains in PDB entry 7D84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 228SER 438
B
ARG 228SER 438
C
ARG 228SER 438
D
ARG 228SER 438
E
ARG 228SER 438
F
ARG 228SER 438
G
ARG 228SER 438
H
ARG 228SER 438
I
ARG 228SER 438
J
ARG 228SER 438
K
ARG 228SER 438
L
ARG 228SER 438
M
ARG 228SER 438
N
ARG 228SER 438
O
ARG 228SER 438
P
ARG 228SER 438
Q
ARG 228SER 438
R
ARG 228SER 438
S
ARG 228SER 438
T
ARG 228SER 438
U
ARG 228SER 438
V
ARG 228SER 438
W
ARG 228SER 438
X
ARG 228SER 438
Y
ARG 228SER 438
Z
ARG 228SER 438
a
ARG 228SER 438
b
ARG 228SER 438
c
ARG 228SER 438
d
ARG 228SER 438
e
ARG 228SER 438
f
ARG 228SER 438
g
ARG 228SER 438
h
ARG 228SER 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are102 helices in PDB entry 7D84. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
228 258Right-handed alpha
Helix 2
AA2
A
287 291Right-handed 310
Helix 3
AA3
A
405 421Right-handed alpha
Helix 4
AA4
B
229 258Right-handed alpha
Helix 5
AA5
B
287 291Right-handed 310
Helix 6
AA6
B
405 421Right-handed alpha
Helix 7
AA7
C
229 258Right-handed alpha
Helix 8
AA8
C
287 291Right-handed 310
Helix 9
AA9
C
405 421Right-handed alpha
Helix 10
AB1
D
229 258Right-handed alpha
Helix 11
AB2
D
287 291Right-handed 310
Helix 12
AB3
D
405 421Right-handed alpha
Helix 13
AB4
E
229 258Right-handed alpha
Helix 14
AB5
E
287 291Right-handed 310
Helix 15
AB6
E
405 421Right-handed alpha
Helix 16
AB7
F
229 258Right-handed alpha
Helix 17
AB8
F
287 291Right-handed 310
Helix 18
AB9
F
405 421Right-handed alpha
Helix 19
AC1
G
229 258Right-handed alpha
Helix 20
AC2
G
287 291Right-handed 310
Helix 21
AC3
G
405 421Right-handed alpha
Helix 22
AC4
H
229 258Right-handed alpha
Helix 23
AC5
H
287 291Right-handed 310
Helix 24
AC6
H
405 421Right-handed alpha
Helix 25
AC7
I
229 258Right-handed alpha
Helix 26
AC8
I
287 291Right-handed 310
Helix 27
AC9
I
405 421Right-handed alpha
Helix 28
AD1
J
229 258Right-handed alpha
Helix 29
AD2
J
287 291Right-handed 310
Helix 30
AD3
J
405 421Right-handed alpha
Helix 31
AD4
K
229 258Right-handed alpha
Helix 32
AD5
K
287 291Right-handed 310
Helix 33
AD6
K
405 421Right-handed alpha
Helix 34
AD7
L
229 258Right-handed alpha
Helix 35
AD8
L
287 291Right-handed 310
Helix 36
AD9
L
405 421Right-handed alpha
Helix 37
AE1
M
229 258Right-handed alpha
Helix 38
AE2
M
287 291Right-handed 310
Helix 39
AE3
M
405 421Right-handed alpha
Helix 40
AE4
N
229 258Right-handed alpha
Helix 41
AE5
N
287 291Right-handed 310
Helix 42
AE6
N
405 421Right-handed alpha
Helix 43
AE7
O
229 258Right-handed alpha
Helix 44
AE8
O
287 291Right-handed 310
Helix 45
AE9
O
405 421Right-handed alpha
Helix 46
AF1
P
229 258Right-handed alpha
Helix 47
AF2
P
287 291Right-handed 310
Helix 48
AF3
P
405 421Right-handed alpha
Helix 49
AF4
Q
229 258Right-handed alpha
Helix 50
AF5
Q
287 291Right-handed 310
Helix 51
AF6
Q
405 421Right-handed alpha
Helix 52
AF7
R
229 258Right-handed alpha
Helix 53
AF8
R
287 291Right-handed 310
Helix 54
AF9
R
405 421Right-handed alpha
Helix 55
AG1
S
229 258Right-handed alpha
Helix 56
AG2
S
287 291Right-handed 310
Helix 57
AG3
S
405 421Right-handed alpha
Helix 58
AG4
T
229 258Right-handed alpha
Helix 59
AG5
T
287 291Right-handed 310
Helix 60
AG6
T
405 421Right-handed alpha
Helix 61
AG7
U
229 258Right-handed alpha
Helix 62
AG8
U
287 291Right-handed 310
Helix 63
AG9
U
405 421Right-handed alpha
Helix 64
AH1
V
229 258Right-handed alpha
Helix 65
AH2
V
287 291Right-handed 310
Helix 66
AH3
V
405 421Right-handed alpha
Helix 67
AH4
W
229 258Right-handed alpha
Helix 68
AH5
W
287 291Right-handed 310
Helix 69
AH6
W
405 421Right-handed alpha
Helix 70
AH7
X
229 258Right-handed alpha
Helix 71
AH8
X
287 291Right-handed 310
Helix 72
AH9
X
405 421Right-handed alpha
Helix 73
AI1
Y
229 258Right-handed alpha
Helix 74
AI2
Y
287 291Right-handed 310
Helix 75
AI3
Y
405 421Right-handed alpha
Helix 76
AI4
Z
229 258Right-handed alpha
Helix 77
AI5
Z
287 291Right-handed 310
Helix 78
AI6
Z
405 421Right-handed alpha
Helix 79
AI7
a
229 258Right-handed alpha
Helix 80
AI8
a
287 291Right-handed 310
Helix 81
AI9
a
405 421Right-handed alpha
Helix 82
AJ1
b
229 258Right-handed alpha
Helix 83
AJ2
b
287 291Right-handed 310
Helix 84
AJ3
b
405 421Right-handed alpha
Helix 85
AJ4
c
229 258Right-handed alpha
Helix 86
AJ5
c
287 291Right-handed 310
Helix 87
AJ6
c
405 421Right-handed alpha
Helix 88
AJ7
d
229 258Right-handed alpha
Helix 89
AJ8
d
287 291Right-handed 310
Helix 90
AJ9
d
405 421Right-handed alpha
Helix 91
AK1
e
229 258Right-handed alpha
Helix 92
AK2
e
287 291Right-handed 310
Helix 93
AK3
e
405 421Right-handed alpha
Helix 94
AK4
f
229 258Right-handed alpha
Helix 95
AK5
f
287 291Right-handed 310
Helix 96
AK6
f
405 421Right-handed alpha
Helix 97
AK7
g
229 258Right-handed alpha
Helix 98
AK8
g
287 291Right-handed 310
Helix 99
AK9
g
405 421Right-handed alpha
Helix 100
AL1
h
229 258Right-handed alpha
Helix 101
AL2
h
287 291Right-handed 310
Helix 102
AL3
h
405 421Right-handed alpha
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There are 36 sheets in PDB entry 7D84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
262 270first strand
Strand 2
A
382 391anti-parallel
Strand 3
A
429 434parallel
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There are 69 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
274 279first strand
Strand 2
A
373 376anti-parallel
Strand 3
B
274 279anti-parallel
Strand 4
B
373 376anti-parallel
Strand 5
C
274 279anti-parallel
Strand 6
C
373 376anti-parallel
Strand 7
D
274 279anti-parallel
Strand 8
D
373 376anti-parallel
Strand 9
E
274 279anti-parallel
Strand 10
E
373 376anti-parallel
Strand 11
F
274 279anti-parallel
Strand 12
F
373 376anti-parallel
Strand 13
G
274 279anti-parallel
Strand 14
G
373 376anti-parallel
Strand 15
H
274 279anti-parallel
Strand 16
H
373 376anti-parallel
Strand 17
I
274 279anti-parallel
Strand 18
I
373 376anti-parallel
Strand 19
J
274 279anti-parallel
Strand 20
J
373 376anti-parallel
Strand 21
K
274 279anti-parallel
Strand 22
K
373 376anti-parallel
Strand 23
L
274 279anti-parallel
Strand 24
L
373 376anti-parallel
Strand 25
M
274 279anti-parallel
Strand 26
M
373 376anti-parallel
Strand 27
N
274 279anti-parallel
Strand 28
N
373 376anti-parallel
Strand 29
O
274 279anti-parallel
Strand 30
O
373 376anti-parallel
Strand 31
P
274 279anti-parallel
Strand 32
P
373 376anti-parallel
Strand 33
Q
274 279anti-parallel
Strand 34
Q
373 376anti-parallel
Strand 35
R
274 279anti-parallel
Strand 36
R
373 376anti-parallel
Strand 37
S
274 279anti-parallel
Strand 38
S
373 376anti-parallel
Strand 39
T
274 279anti-parallel
Strand 40
T
373 376anti-parallel
Strand 41
U
274 279anti-parallel
Strand 42
U
373 376anti-parallel
Strand 43
V
274 279anti-parallel
Strand 44
V
373 376anti-parallel
Strand 45
W
274 279anti-parallel
Strand 46
W
373 376anti-parallel
Strand 47
X
274 279anti-parallel
Strand 48
X
373 376anti-parallel
Strand 49
Y
274 279anti-parallel
Strand 50
Y
373 376anti-parallel
Strand 51
Z
274 279anti-parallel
Strand 52
Z
373 376anti-parallel
Strand 53
a
274 279anti-parallel
Strand 54
a
373 376anti-parallel
Strand 55
b
274 279anti-parallel
Strand 56
b
373 376anti-parallel
Strand 57
c
274 279anti-parallel
Strand 58
c
373 376anti-parallel
Strand 59
d
274 279anti-parallel
Strand 60
d
373 376anti-parallel
Strand 61
e
274 279anti-parallel
Strand 62
e
373 376anti-parallel
Strand 63
f
274 279anti-parallel
Strand 64
f
373 376anti-parallel
Strand 65
g
274 279anti-parallel
Strand 66
g
373 376anti-parallel
Strand 67
h
274 279anti-parallel
Strand 68
h
373 376anti-parallel
Strand 69
A
274 279anti-parallel
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There are 69 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
295 302first strand
Strand 2
A
358 365anti-parallel
Strand 3
h
295 302anti-parallel
Strand 4
h
358 365anti-parallel
Strand 5
g
295 302anti-parallel
Strand 6
g
358 365anti-parallel
Strand 7
f
295 302anti-parallel
Strand 8
f
358 365anti-parallel
Strand 9
e
295 302anti-parallel
Strand 10
e
358 365anti-parallel
Strand 11
d
295 302anti-parallel
Strand 12
d
358 365anti-parallel
Strand 13
c
295 302anti-parallel
Strand 14
c
358 365anti-parallel
Strand 15
b
295 302anti-parallel
Strand 16
b
358 365anti-parallel
Strand 17
a
295 302anti-parallel
Strand 18
a
358 365anti-parallel
Strand 19
Z
295 302anti-parallel
Strand 20
Z
358 365anti-parallel
Strand 21
Y
295 302anti-parallel
Strand 22
Y
358 365anti-parallel
Strand 23
X
295 302anti-parallel
Strand 24
X
358 365anti-parallel
Strand 25
W
295 302anti-parallel
Strand 26
W
358 365anti-parallel
Strand 27
V
295 302anti-parallel
Strand 28
V
358 365anti-parallel
Strand 29
U
295 302anti-parallel
Strand 30
U
358 365anti-parallel
Strand 31
T
295 302anti-parallel
Strand 32
T
358 365anti-parallel
Strand 33
S
295 302anti-parallel
Strand 34
S
358 365anti-parallel
Strand 35
R
295 302anti-parallel
Strand 36
R
358 365anti-parallel
Strand 37
Q
295 302anti-parallel
Strand 38
Q
358 365anti-parallel
Strand 39
P
295 302anti-parallel
Strand 40
P
358 365anti-parallel
Strand 41
O
295 302anti-parallel
Strand 42
O
358 365anti-parallel
Strand 43
N
295 302anti-parallel
Strand 44
N
358 365anti-parallel
Strand 45
M
295 302anti-parallel
Strand 46
M
358 365anti-parallel
Strand 47
L
295 302anti-parallel
Strand 48
L
358 365anti-parallel
Strand 49
K
295 302anti-parallel
Strand 50
K
358 365anti-parallel
Strand 51
J
295 302anti-parallel
Strand 52
J
358 365anti-parallel
Strand 53
I
295 302anti-parallel
Strand 54
I
358 365anti-parallel
Strand 55
H
295 302anti-parallel
Strand 56
H
358 365anti-parallel
Strand 57
G
295 302anti-parallel
Strand 58
G
358 365anti-parallel
Strand 59
F
295 302anti-parallel
Strand 60
F
358 365anti-parallel
Strand 61
E
295 302anti-parallel
Strand 62
E
358 365anti-parallel
Strand 63
D
295 302anti-parallel
Strand 64
D
358 365anti-parallel
Strand 65
C
295 302anti-parallel
Strand 66
C
358 365anti-parallel
Strand 67
B
295 302anti-parallel
Strand 68
B
358 365anti-parallel
Strand 69
A
295 302anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
262 270first strand
Strand 2
B
382 391anti-parallel
Strand 3
B
429 434parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
262 270first strand
Strand 2
C
382 391anti-parallel
Strand 3
C
429 434parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
262 270first strand
Strand 2
D
382 391anti-parallel
Strand 3
D
429 434parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
262 270first strand
Strand 2
E
382 391anti-parallel
Strand 3
E
429 434parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
262 270first strand
Strand 2
F
382 391anti-parallel
Strand 3
F
429 434parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
262 270first strand
Strand 2
G
382 391anti-parallel
Strand 3
G
429 434parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
262 270first strand
Strand 2
H
382 391anti-parallel
Strand 3
H
429 434parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
262 270first strand
Strand 2
I
382 391anti-parallel
Strand 3
I
429 434parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
262 270first strand
Strand 2
J
382 391anti-parallel
Strand 3
J
429 434parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
262 270first strand
Strand 2
K
382 391anti-parallel
Strand 3
K
429 434parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
262 270first strand
Strand 2
L
382 391anti-parallel
Strand 3
L
429 434parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
262 270first strand
Strand 2
M
382 391anti-parallel
Strand 3
M
429 434parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
262 270first strand
Strand 2
N
382 391anti-parallel
Strand 3
N
429 434parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
262 270first strand
Strand 2
O
382 391anti-parallel
Strand 3
O
429 434parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
262 270first strand
Strand 2
P
382 391anti-parallel
Strand 3
P
429 434parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
262 270first strand
Strand 2
Q
382 391anti-parallel
Strand 3
Q
429 434parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
262 270first strand
Strand 2
R
382 391anti-parallel
Strand 3
R
429 434parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
262 270first strand
Strand 2
S
382 391anti-parallel
Strand 3
S
429 434parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
262 270first strand
Strand 2
T
382 391anti-parallel
Strand 3
T
429 434parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
262 270first strand
Strand 2
U
382 391anti-parallel
Strand 3
U
429 434parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
262 270first strand
Strand 2
V
382 391anti-parallel
Strand 3
V
429 434parallel
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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
262 270first strand
Strand 2
W
382 391anti-parallel
Strand 3
W
429 434parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
262 270first strand
Strand 2
X
382 391anti-parallel
Strand 3
X
429 434parallel
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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
262 270first strand
Strand 2
Y
382 391anti-parallel
Strand 3
Y
429 434parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
262 270first strand
Strand 2
Z
382 391anti-parallel
Strand 3
Z
429 434parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
262 270first strand
Strand 2
a
382 391anti-parallel
Strand 3
a
429 434parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
b
262 270first strand
Strand 2
b
382 391anti-parallel
Strand 3
b
429 434parallel
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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
c
262 270first strand
Strand 2
c
382 391anti-parallel
Strand 3
c
429 434parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
d
262 270first strand
Strand 2
d
382 391anti-parallel
Strand 3
d
429 434parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
e
262 270first strand
Strand 2
e
382 391anti-parallel
Strand 3
e
429 434parallel
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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
f
262 270first strand
Strand 2
f
382 391anti-parallel
Strand 3
f
429 434parallel
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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
g
262 270first strand
Strand 2
g
382 391anti-parallel
Strand 3
g
429 434parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
h
262 270first strand
Strand 2
h
382 391anti-parallel
Strand 3
h
429 434parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il