Analysis of interatomic Contacts of Structural Units in PDB entry:
7D85

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D85 entry

There are 6 chains in PDB entry 7D85 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 308	SER 500
B	GLU 1	LYS 222
C	SER 2	GLU 214
D	ILE 308	SER 500
E	GLU 1	LYS 222
F	SER 2	GLU 214

There are 32 helices in PDB entry 7D85. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	328	333	Right-handed 310
Helix 2	AA2	A	345	351	Right-handed alpha
Helix 3	AA3	A	361	371	Right-handed 310
Helix 4	AA4	A	390	394	Right-handed 310
Helix 5	AA5	A	450	456	Right-handed alpha
Helix 6	AA6	A	470	477	Right-handed alpha
Helix 7	AA7	A	494	498	Right-handed 310
Helix 8	AA8	B	28	30	Right-handed 310
Helix 9	AA9	B	74	76	Right-handed 310
Helix 10	AB1	B	87	91	Right-handed 310
Helix 11	AB2	B	193	197	Right-handed 310
Helix 12	AB3	B	209	212	Right-handed 310
Helix 13	AB4	C	80	84	Right-handed 310
Helix 14	AB5	C	125	131	Right-handed alpha
Helix 15	AB6	C	185	192	Right-handed alpha
Helix 16	AB7	D	325	330	Right-handed alpha
Helix 17	AB8	D	331	333	Right-handed 310
Helix 18	AB9	D	345	351	Right-handed alpha
Helix 19	AC1	D	361	371	Right-handed 310
Helix 20	AC2	D	390	394	Right-handed 310
Helix 21	AC3	D	450	456	Right-handed alpha
Helix 22	AC4	D	470	477	Right-handed alpha
Helix 23	AC5	D	494	498	Right-handed 310
Helix 24	AC6	E	28	30	Right-handed 310
Helix 25	AC7	E	62	65	Right-handed 310
Helix 26	AC8	E	87	91	Right-handed 310
Helix 27	AC9	E	164	166	Right-handed 310
Helix 28	AD1	E	195	197	Right-handed 310
Helix 29	AD2	E	209	212	Right-handed 310
Helix 30	AD3	F	80	84	Right-handed 310
Helix 31	AD4	F	125	131	Right-handed alpha
Helix 32	AD5	F	185	192	Right-handed alpha

There are 28 sheets in PDB entry 7D85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	313	first strand
Strand 2	A	337	339	parallel
Strand 3	A	373	374	parallel
Strand 4	A	398	399	parallel
Strand 5	A	429	430	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	378	380	parallel
Strand 3	A	409	414	parallel
Strand 4	A	434	438	parallel
Strand 5	A	463	466	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	115	119	parallel
Strand 3	B	92	100	anti-parallel
Strand 4	B	32	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	115	119	parallel
Strand 3	B	92	100	anti-parallel
Strand 4	B	110	111	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	144	153	anti-parallel
Strand 3	B	184	192	anti-parallel
Strand 4	B	171	173	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	144	153	anti-parallel
Strand 3	B	184	192	anti-parallel
Strand 4	B	177	178	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	213	218	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	105	109	parallel
Strand 3	C	85	92	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	49	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	105	109	parallel
Strand 3	C	85	92	anti-parallel
Strand 4	C	99	101	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	23	first strand
Strand 2	C	71	76	anti-parallel
Strand 3	C	63	68	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	134	143	anti-parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	163	165	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	134	143	anti-parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	169	170	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	149	154	anti-parallel
Strand 3	C	195	201	anti-parallel
Strand 4	C	204	210	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	313	first strand
Strand 2	D	337	339	parallel
Strand 3	D	373	374	parallel
Strand 4	D	398	399	parallel
Strand 5	D	429	430	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	344	first strand
Strand 2	D	378	380	parallel
Strand 3	D	409	414	parallel
Strand 4	D	434	438	parallel
Strand 5	D	463	466	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	32	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	110	111	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	132	first strand
Strand 2	E	143	153	anti-parallel
Strand 3	E	184	193	anti-parallel
Strand 4	E	171	173	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	132	first strand
Strand 2	E	143	153	anti-parallel
Strand 3	E	184	193	anti-parallel
Strand 4	E	177	178	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	162	first strand
Strand 2	E	202	208	anti-parallel
Strand 3	E	213	219	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	105	109	parallel
Strand 3	F	85	93	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	46	49	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	105	109	parallel
Strand 3	F	85	93	anti-parallel
Strand 4	F	98	101	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	71	76	anti-parallel
Strand 3	F	63	68	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	122	first strand
Strand 2	F	134	143	anti-parallel
Strand 3	F	176	184	anti-parallel
Strand 4	F	163	165	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	122	first strand
Strand 2	F	134	143	anti-parallel
Strand 3	F	176	184	anti-parallel
Strand 4	F	169	170	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	159	first strand
Strand 2	F	149	154	anti-parallel
Strand 3	F	195	201	anti-parallel
Strand 4	F	204	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D85

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D85