Analysis of interatomic Contacts of Structural Units in PDB entry:
7D88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D88 entry

There is 1 chain in PDB entry 7D88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 22SER 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 7D88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 36Right-handed alpha
Helix 2
AA2
A
73 78Right-handed 310
Helix 3
AA3
A
79 90Right-handed alpha
Helix 4
AA4
A
100 105Right-handed alpha
Helix 5
AA5
A
113 126Right-handed alpha
Helix 6
AA6
A
139 143Right-handed 310
Helix 7
AA7
A
144 148Right-handed 310
Helix 8
AA8
A
151 170Right-handed alpha
Helix 9
AA9
A
189 194Right-handed alpha
Helix 10
AB1
A
195 209Right-handed alpha
Helix 11
AB2
A
226 240Right-handed alpha
Helix 12
AB3
A
258 271Right-handed alpha
Helix 13
AB4
A
287 304Right-handed alpha
Helix 14
AB5
A
324 328Right-handed 310
Helix 15
AB6
A
337 350Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7D88. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 356first strand
Strand 2
A
57 64anti-parallel
Strand 3
A
371 376anti-parallel
Strand 4
A
382 386anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
92 95parallel
Strand 3
A
130 137parallel
Strand 4
A
176 181parallel
Strand 5
A
213 218parallel
Strand 6
A
246 249parallel
Strand 7
A
276 281parallel
Strand 8
A
308 313parallel
Strand 9
A
67 72parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il