Analysis of interatomic Contacts of Structural Units in PDB entry:
7D89


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D89 entry

There is 1 chain in PDB entry 7D89 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 22ASP 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7D89. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 36Right-handed alpha
Helix 2
AA2
A
74 79Right-handed alpha
Helix 3
AA3
A
79 90Right-handed alpha
Helix 4
AA4
A
100 105Right-handed alpha
Helix 5
AA5
A
113 126Right-handed alpha
Helix 6
AA6
A
139 143Right-handed 310
Helix 7
AA7
A
144 150Right-handed 310
Helix 8
AA8
A
151 170Right-handed alpha
Helix 9
AA9
A
183 186Right-handed 310
Helix 10
AB1
A
189 194Right-handed alpha
Helix 11
AB2
A
195 209Right-handed alpha
Helix 12
AB3
A
226 240Right-handed alpha
Helix 13
AB4
A
258 271Right-handed alpha
Helix 14
AB5
A
287 305Right-handed alpha
Helix 15
AB6
A
317 321Right-handed 310
Helix 16
AB7
A
324 328Right-handed 310
Helix 17
AB8
A
337 350Right-handed alpha
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There are 3 sheets in PDB entry 7D89. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
366 369anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 356first strand
Strand 2
A
57 64anti-parallel
Strand 3
A
371 376anti-parallel
Strand 4
A
383 386anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
176 181parallel
Strand 3
A
213 218parallel
Strand 4
A
246 249parallel
Strand 5
A
276 281parallel
Strand 6
A
308 313parallel
Strand 7
A
67 72parallel
Strand 8
A
92 95parallel
Strand 9
A
130 132parallel
Strand 10
A
176 181parallel
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