Analysis of interatomic Contacts of Structural Units in PDB entry:
7D8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D8C entry

There are 3 chains in PDB entry 7D8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7LYS 1091
B
 A 1 A 38
C
 A 1 U 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 7D8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 52Right-handed alpha
Helix 2
AA2
A
53 55Right-handed 310
Helix 3
AA3
A
70 79Right-handed alpha
Helix 4
AA4
A
95 106Right-handed alpha
Helix 5
AA5
A
110 119Right-handed alpha
Helix 6
AA6
A
131 142Right-handed alpha
Helix 7
AA7
A
145 159Right-handed alpha
Helix 8
AA8
A
168 177Right-handed alpha
Helix 9
AA9
A
190 202Right-handed alpha
Helix 10
AB1
A
208 218Right-handed alpha
Helix 11
AB2
A
239 243Right-handed alpha
Helix 12
AB3
A
262 276Right-handed alpha
Helix 13
AB4
A
281 293Right-handed alpha
Helix 14
AB5
A
297 333Right-handed alpha
Helix 15
AB6
A
337 346Right-handed alpha
Helix 16
AB7
A
366 371Right-handed 310
Helix 17
AB8
A
372 394Right-handed alpha
Helix 18
AB9
A
400 424Right-handed alpha
Helix 19
AC1
A
429 439Right-handed alpha
Helix 20
AC2
A
444 462Right-handed alpha
Helix 21
AC3
A
493 498Right-handed alpha
Helix 22
AC4
A
533 541Right-handed alpha
Helix 23
AC5
A
571 580Right-handed alpha
Helix 24
AC6
A
582 601Right-handed alpha
Helix 25
AC7
A
708 722Right-handed alpha
Helix 26
AC8
A
739 747Right-handed alpha
Helix 27
AC9
A
752 771Right-handed alpha
Helix 28
AD1
A
772 775Right-handed 310
Helix 29
AD2
A
778 787Right-handed alpha
Helix 30
AD3
A
800 822Right-handed alpha
Helix 31
AD4
A
842 845Right-handed 310
Helix 32
AD5
A
846 886Right-handed alpha
Helix 33
AD6
A
914 928Right-handed alpha
Helix 34
AD7
A
929 931Right-handed 310
Helix 35
AD8
A
972 984Right-handed alpha
Helix 36
AD9
A
993 1008Right-handed alpha
Helix 37
AE1
A
1019 1032Right-handed alpha
Helix 38
AE2
A
1073 1084Right-handed alpha
Helix 39
AE3
A
1086 1090Right-handed 310
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There are 7 sheets in PDB entry 7D8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 16first strand
Strand 2
A
623 634anti-parallel
Strand 3
A
613 620anti-parallel
Strand 4
A
476 478anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
126 130anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 488first strand
Strand 2
A
510 518anti-parallel
Strand 3
A
523 531anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
669 670first strand
Strand 2
A
675 683anti-parallel
Strand 3
A
655 661anti-parallel
Strand 4
A
642 647anti-parallel
Strand 5
A
889 894parallel
Strand 6
A
934 939parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 726first strand
Strand 2
A
736 738anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
963 965first strand
Strand 2
A
1039 1041anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1047 1050first strand
Strand 2
A
1066 1072anti-parallel
Strand 3
A
1059 1063anti-parallel
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