Analysis of interatomic Contacts of Structural Units in PDB entry:
7D8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D8F entry

There is 1 chain in PDB entry 7D8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1ASN 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7D8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed 310
Helix 2
AA2
A
10 20Right-handed alpha
Helix 3
AA3
A
24 29Right-handed alpha
Helix 4
AA4
A
37 53Right-handed alpha
Helix 5
AA5
A
54 57Right-handed 310
Helix 6
AA6
A
75 81Right-handed alpha
Helix 7
AA7
A
81 86Right-handed alpha
Helix 8
AA8
A
95 106Right-handed alpha
Helix 9
AA9
A
106 112Right-handed alpha
Helix 10
AB1
A
122 126Right-handed 310
Helix 11
AB2
A
141 145Right-handed 310
Helix 12
AB3
A
146 160Right-handed alpha
Helix 13
AB4
A
191 202Right-handed alpha
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There are 2 sheets in PDB entry 7D8F. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
88 92parallel
Strand 3
A
66 70parallel
Strand 4
A
133 139parallel
Strand 5
A
161 172parallel
Strand 6
A
222 229anti-parallel
Strand 7
A
204 211anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
187 189anti-parallel
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