Analysis of interatomic Contacts of Structural Units in PDB entry:
7D8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D8M entry

There is 1 chain in PDB entry 7D8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 58HIS 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7D8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 70Right-handed alpha
Helix 2
AA2
A
86 102Right-handed alpha
Helix 3
AA3
A
104 110Right-handed alpha
Helix 4
AA4
A
111 115Right-handed 310
Helix 5
AA5
A
125 132Right-handed alpha
Helix 6
AA6
A
140 146Right-handed alpha
Helix 7
AA7
A
146 151Right-handed alpha
Helix 8
AA8
A
152 155Right-handed 310
Helix 9
AA9
A
157 161Right-handed 310
Helix 10
AB1
A
162 166Right-handed 310
Helix 11
AB2
A
180 196Right-handed alpha
Helix 12
AB3
A
211 215Right-handed 310
Helix 13
AB4
A
245 250Right-handed alpha
Helix 14
AB5
A
262 266Right-handed 310
Helix 15
AB6
A
279 290Right-handed alpha
Helix 16
AB7
A
300 314Right-handed alpha
Helix 17
AB8
A
330 336Right-handed alpha
Helix 18
AB9
A
363 369Right-handed alpha
Helix 19
AC1
A
370 376Right-handed alpha
Helix 20
AC2
A
397 404Right-handed alpha
Helix 21
AC3
A
420 423Right-handed 310
Helix 22
AC4
A
424 431Right-handed alpha
Helix 23
AC5
A
492 499Right-handed alpha
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There are 4 sheets in PDB entry 7D8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 124first strand
Strand 2
A
172 178anti-parallel
Strand 3
A
76 84anti-parallel
Strand 4
A
199 208anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
411 418anti-parallel
Strand 3
A
390 392anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
411 418anti-parallel
Strand 3
A
269 278anti-parallel
Strand 4
A
480 490anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 463first strand
Strand 2
A
473 475anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il