Analysis of interatomic Contacts of Structural Units in PDB entry:
7D8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D8P entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 7D8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 230
B
 ASP 2SER 230
C
 ARG 147ASN 150
C
 ASP 152HIS 156
D
 ARG 147ASN 150
D
 ASP 152LEU 155
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7D8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
18 31Right-handed alpha
Helix 3
AA3
A
37 68Right-handed alpha
Helix 4
AA4
A
74 104Right-handed alpha
Helix 5
AA5
A
104 109Right-handed alpha
Helix 6
AA6
A
111 133Right-handed alpha
Helix 7
AA7
A
134 136Right-handed 310
Helix 8
AA8
A
137 160Right-handed alpha
Helix 9
AA9
A
164 181Right-handed alpha
Helix 10
AB1
A
184 202Right-handed alpha
Helix 11
AB2
A
211 230Right-handed alpha
Helix 12
AB3
B
3 16Right-handed alpha
Helix 13
AB4
B
18 31Right-handed alpha
Helix 14
AB5
B
37 68Right-handed alpha
Helix 15
AB6
B
72 104Right-handed alpha
Helix 16
AB7
B
104 109Right-handed alpha
Helix 17
AB8
B
111 133Right-handed alpha
Helix 18
AB9
B
137 160Right-handed alpha
Helix 19
AC1
B
164 181Right-handed alpha
Helix 20
AC2
B
184 202Right-handed alpha
Helix 21
AC3
B
210 230Right-handed alpha
Helix 22
AC4
C
151 156Right-handed 310
Helix 23
AC5
D
151 155Right-handed 310
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There are no sheets in PDB entry 7D8P
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il