Analysis of interatomic Contacts of Structural Units in PDB entry:
7D8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D8R entry

There are 4 chains in PDB entry 7D8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 326LEU 502
B
 ASN 326LEU 502
C
 ASN 326LEU 502
D
 ASN 326LEU 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7D8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
327 338Right-handed alpha
Helix 2
AA2
A
350 394Right-handed alpha
Helix 3
AA3
A
396 402Right-handed alpha
Helix 4
AA4
A
445 450Right-handed alpha
Helix 5
AA5
B
327 338Right-handed alpha
Helix 6
AA6
B
350 402Right-handed alpha
Helix 7
AA7
B
440 444Right-handed 310
Helix 8
AA8
B
445 450Right-handed alpha
Helix 9
AA9
C
328 335Right-handed alpha
Helix 10
AB1
C
350 368Right-handed alpha
Helix 11
AB2
C
369 402Right-handed alpha
Helix 12
AB3
C
445 450Right-handed alpha
Helix 13
AB4
D
327 336Right-handed alpha
Helix 14
AB5
D
350 394Right-handed alpha
Helix 15
AB6
D
396 402Right-handed alpha
Helix 16
AB7
D
445 450Right-handed alpha
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There are 7 sheets in PDB entry 7D8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 438first strand
Strand 2
A
423 428anti-parallel
Strand 3
A
405 415anti-parallel
Strand 4
A
453 457anti-parallel
Strand 5
A
473 474anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 478first strand
Strand 2
A
483 488anti-parallel
Strand 3
C
483 488anti-parallel
Strand 4
C
476 478anti-parallel
Strand 5
A
498 499anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
433 438first strand
Strand 2
B
423 428anti-parallel
Strand 3
B
405 415anti-parallel
Strand 4
B
497 500anti-parallel
Strand 5
D
473 478anti-parallel
Strand 6
D
453 457anti-parallel
Strand 7
D
405 416anti-parallel
Strand 8
D
419 428anti-parallel
Strand 9
D
433 438anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 474first strand
Strand 2
B
453 457anti-parallel
Strand 3
B
405 415anti-parallel
Strand 4
B
497 500anti-parallel
Strand 5
D
473 478anti-parallel
Strand 6
D
483 488anti-parallel
Strand 7
B
483 488anti-parallel
Strand 8
B
476 478anti-parallel
Strand 9
D
498 499anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
463 465first strand
Strand 2
B
468 470anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
433 438first strand
Strand 2
C
423 428anti-parallel
Strand 3
C
405 415anti-parallel
Strand 4
C
453 457anti-parallel
Strand 5
C
473 474anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
463 465first strand
Strand 2
C
468 470anti-parallel
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