Analysis of interatomic Contacts of Structural Units in PDB entry:
7D8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D8T entry

There are 4 chains in PDB entry 7D8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 1 G 16
D
 T 1 C 16
A
 SER 305GLU 503
B
 SER 305GLU 503
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 7D8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
305 338Right-handed alpha
Helix 2
AA2
A
349 390Right-handed alpha
Helix 3
AA3
A
445 450Right-handed alpha
Helix 4
AA4
B
306 338Right-handed alpha
Helix 5
AA5
B
349 367Right-handed alpha
Helix 6
AA6
B
367 389Right-handed alpha
Helix 7
AA7
B
390 392Right-handed 310
Helix 8
AA8
B
396 402Right-handed alpha
Helix 9
AA9
B
445 449Right-handed 310
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There are 7 sheets in PDB entry 7D8T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 438first strand
Strand 2
A
423 428anti-parallel
Strand 3
A
405 415anti-parallel
Strand 4
A
453 457anti-parallel
Strand 5
A
473 474anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 438first strand
Strand 2
A
423 428anti-parallel
Strand 3
A
405 415anti-parallel
Strand 4
A
496 497anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 465first strand
Strand 2
A
468 470anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 478first strand
Strand 2
A
483 485anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
433 438first strand
Strand 2
B
423 428anti-parallel
Strand 3
B
405 410anti-parallel
Strand 4
B
453 457anti-parallel
Strand 5
B
473 474anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
463 465first strand
Strand 2
B
468 470anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
476 478first strand
Strand 2
B
483 485anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il