Analysis of interatomic Contacts of Structural Units in PDB entry:
7D8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D8U entry

There are 2 chains in PDB entry 7D8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ASN 868
B
 SER -2ASN 868
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7D8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
596 613Right-handed alpha
Helix 2
AA2
A
630 637Right-handed alpha
Helix 3
AA3
A
648 661Right-handed alpha
Helix 4
AA4
A
684 694Right-handed alpha
Helix 5
AA5
A
711 716Right-handed 310
Helix 6
AA6
A
718 732Right-handed alpha
Helix 7
AA7
A
745 756Right-handed alpha
Helix 8
AA8
A
810 821Right-handed alpha
Helix 9
AA9
A
834 839Right-handed alpha
Helix 10
AB1
A
842 849Right-handed alpha
Helix 11
AB2
A
850 858Right-handed alpha
Helix 12
AB3
B
596 613Right-handed alpha
Helix 13
AB4
B
630 638Right-handed alpha
Helix 14
AB5
B
648 661Right-handed alpha
Helix 15
AB6
B
684 694Right-handed alpha
Helix 16
AB7
B
711 716Right-handed 310
Helix 17
AB8
B
718 732Right-handed alpha
Helix 18
AB9
B
745 757Right-handed alpha
Helix 19
AC1
B
810 820Right-handed alpha
Helix 20
AC2
B
834 841Right-handed alpha
Helix 21
AC3
B
842 848Right-handed alpha
Helix 22
AC4
B
850 858Right-handed alpha
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There are 5 sheets in PDB entry 7D8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-1 588first strand
Strand 2
B
-1 588anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 678first strand
Strand 2
A
641 646parallel
Strand 3
A
619 623parallel
Strand 4
A
703 709parallel
Strand 5
A
733 744parallel
Strand 6
A
860 867anti-parallel
Strand 7
A
823 830anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
763 765first strand
Strand 2
A
775 778anti-parallel
Strand 3
A
791 795anti-parallel
Strand 4
A
803 807anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
673 678first strand
Strand 2
B
641 646parallel
Strand 3
B
619 623parallel
Strand 4
B
703 709parallel
Strand 5
B
733 744parallel
Strand 6
B
860 867anti-parallel
Strand 7
B
823 830anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
763 768first strand
Strand 2
B
771 778anti-parallel
Strand 3
B
791 795anti-parallel
Strand 4
B
803 807anti-parallel
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