Analysis of interatomic Contacts of Structural Units in PDB entry:
7D8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D8V entry

There is 1 chain in PDB entry 7D8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LYS 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7D8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 22Right-handed alpha
Helix 2
AA2
A
75 83Right-handed alpha
Helix 3
AA3
A
83 93Right-handed alpha
Helix 4
AA4
A
108 114Right-handed alpha
Helix 5
AA5
A
121 138Right-handed alpha
Helix 6
AA6
A
193 211Right-handed alpha
Helix 7
AA7
A
215 220Right-handed alpha
Helix 8
AA8
A
277 295Right-handed alpha
Helix 9
AA9
A
304 307Right-handed 310
Helix 10
AB1
A
308 314Right-handed alpha
Helix 11
AB2
A
315 318Right-handed 310
Helix 12
AB3
A
333 335Right-handed 310
Helix 13
AB4
A
336 351Right-handed alpha
Helix 14
AB5
A
363 383Right-handed alpha
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There are 5 sheets in PDB entry 7D8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
354 355anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
7 12parallel
Strand 3
A
323 330parallel
Strand 4
A
97 102parallel
Strand 5
A
241 253parallel
Strand 6
A
223 236anti-parallel
Strand 7
A
142 154anti-parallel
Strand 8
A
157 160anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
7 12parallel
Strand 3
A
323 330parallel
Strand 4
A
97 102parallel
Strand 5
A
241 253parallel
Strand 6
A
223 236anti-parallel
Strand 7
A
142 154anti-parallel
Strand 8
A
189 191anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
34 37anti-parallel
Strand 3
A
54 57anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
182 184anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il