Analysis of interatomic Contacts of Structural Units in PDB entry:
7D8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D8Z entry

There are 2 chains in PDB entry 7D8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 81ILE 1135
A
 VAL 81ILE 1135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 7D8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
81 89Right-handed alpha
Helix 2
AA2
B
98 106Right-handed alpha
Helix 3
AA3
B
121 126Right-handed alpha
Helix 4
AA4
B
126 133Right-handed alpha
Helix 5
AA5
B
137 142Right-handed alpha
Helix 6
AA6
B
143 151Right-handed alpha
Helix 7
AA7
B
152 179Right-handed alpha
Helix 8
AA8
B
187 229Right-handed alpha
Helix 9
AA9
B
244 271Right-handed alpha
Helix 10
AB1
B
271 278Right-handed alpha
Helix 11
AB2
B
278 303Right-handed alpha
Helix 12
AB3
B
338 345Right-handed alpha
Helix 13
AB4
B
355 361Right-handed alpha
Helix 14
AB5
B
422 431Right-handed alpha
Helix 15
AB6
B
432 434Right-handed 310
Helix 16
AB7
B
436 442Right-handed 310
Helix 17
AB8
B
449 478Right-handed alpha
Helix 18
AB9
B
481 486Right-handed alpha
Helix 19
AC1
B
487 494Right-handed 310
Helix 20
AC2
B
499 503Right-handed 310
Helix 21
AC3
B
507 525Right-handed alpha
Helix 22
AC4
B
527 540Right-handed alpha
Helix 23
AC5
B
542 550Right-handed 310
Helix 24
AC6
B
559 575Right-handed alpha
Helix 25
AC7
B
576 605Right-handed alpha
Helix 26
AC8
B
619 637Right-handed alpha
Helix 27
AC9
B
637 664Right-handed alpha
Helix 28
AD1
B
669 683Right-handed alpha
Helix 29
AD2
B
711 722Right-handed alpha
Helix 30
AD3
B
737 740Right-handed 310
Helix 31
AD4
B
741 759Right-handed alpha
Helix 32
AD5
B
772 779Right-handed alpha
Helix 33
AD6
B
807 825Right-handed alpha
Helix 34
AD7
B
857 862Right-handed alpha
Helix 35
AD8
B
862 870Right-handed alpha
Helix 36
AD9
B
890 905Right-handed alpha
Helix 37
AE1
B
1068 1085Right-handed alpha
Helix 38
AE2
B
1111 1118Right-handed alpha
Helix 39
AE3
A
82 89Right-handed alpha
Helix 40
AE4
A
98 106Right-handed alpha
Helix 41
AE5
A
121 126Right-handed alpha
Helix 42
AE6
A
126 133Right-handed alpha
Helix 43
AE7
A
137 142Right-handed alpha
Helix 44
AE8
A
143 151Right-handed alpha
Helix 45
AE9
A
152 179Right-handed alpha
Helix 46
AF1
A
187 229Right-handed alpha
Helix 47
AF2
A
244 271Right-handed alpha
Helix 48
AF3
A
271 278Right-handed alpha
Helix 49
AF4
A
278 303Right-handed alpha
Helix 50
AF5
A
338 345Right-handed alpha
Helix 51
AF6
A
355 361Right-handed alpha
Helix 52
AF7
A
422 431Right-handed alpha
Helix 53
AF8
A
432 434Right-handed 310
Helix 54
AF9
A
436 442Right-handed 310
Helix 55
AG1
A
449 478Right-handed alpha
Helix 56
AG2
A
481 486Right-handed alpha
Helix 57
AG3
A
487 494Right-handed 310
Helix 58
AG4
A
499 503Right-handed 310
Helix 59
AG5
A
507 525Right-handed alpha
Helix 60
AG6
A
527 540Right-handed alpha
Helix 61
AG7
A
542 550Right-handed 310
Helix 62
AG8
A
559 575Right-handed alpha
Helix 63
AG9
A
576 605Right-handed alpha
Helix 64
AH1
A
619 637Right-handed alpha
Helix 65
AH2
A
637 664Right-handed alpha
Helix 66
AH3
A
669 683Right-handed alpha
Helix 67
AH4
A
711 722Right-handed alpha
Helix 68
AH5
A
737 740Right-handed 310
Helix 69
AH6
A
741 759Right-handed alpha
Helix 70
AH7
A
772 779Right-handed alpha
Helix 71
AH8
A
807 825Right-handed alpha
Helix 72
AH9
A
857 862Right-handed alpha
Helix 73
AI1
A
862 870Right-handed alpha
Helix 74
AI2
A
890 905Right-handed alpha
Helix 75
AI3
A
1068 1085Right-handed alpha
Helix 76
AI4
A
1111 1118Right-handed alpha
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There are 6 sheets in PDB entry 7D8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
308 312anti-parallel
Strand 3
B
363 367anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 331first strand
Strand 2
B
334 337anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
764 770first strand
Strand 2
B
729 735parallel
Strand 3
B
697 701parallel
Strand 4
B
793 796parallel
Strand 5
B
827 832parallel
Strand 6
B
1124 1129anti-parallel
Strand 7
B
1092 1096parallel
Strand 8
B
847 852parallel
Strand 9
B
877 885parallel
Strand 10
B
910 915parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
308 312anti-parallel
Strand 3
A
363 367anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
334 337anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 770first strand
Strand 2
A
729 735parallel
Strand 3
A
697 701parallel
Strand 4
A
793 796parallel
Strand 5
A
827 832parallel
Strand 6
A
1124 1129anti-parallel
Strand 7
A
1092 1096parallel
Strand 8
A
847 852parallel
Strand 9
A
877 885parallel
Strand 10
A
910 915parallel
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