Analysis of interatomic Contacts of Structural Units in PDB entry:
7D93

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D93 entry

There are 8 chains in PDB entry 7D93 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 21	SER 368
A	LYS 370	TYR 1016
B	LYS 13	SER 303
C	LYS 21	SER 368
C	LYS 370	TYR 1016
D	LYS 13	SER 303
E	ASP 17	LYS 48
G	ASP 17	LYS 48

There are109 helices in PDB entry 7D93. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	31	Right-handed alpha
Helix 2	AA2	A	40	49	Right-handed alpha
Helix 3	AA3	A	57	69	Right-handed alpha
Helix 4	AA4	A	80	89	Right-handed alpha
Helix 5	AA5	A	92	115	Right-handed alpha
Helix 6	AA6	A	120	153	Right-handed alpha
Helix 7	AA7	A	176	178	Right-handed 310
Helix 8	AA8	A	208	213	Right-handed alpha
Helix 9	AA9	A	254	257	Right-handed 310
Helix 10	AB1	A	258	269	Right-handed alpha
Helix 11	AB2	A	275	307	Right-handed alpha
Helix 12	AB3	A	309	324	Right-handed alpha
Helix 13	AB4	A	328	347	Right-handed alpha
Helix 14	AB5	A	355	363	Right-handed alpha
Helix 15	AB6	A	408	421	Right-handed alpha
Helix 16	AB7	A	443	457	Right-handed alpha
Helix 17	AB8	A	460	466	Right-handed alpha
Helix 18	AB9	A	503	508	Right-handed alpha
Helix 19	AC1	A	509	511	Right-handed 310
Helix 20	AC2	A	524	541	Right-handed alpha
Helix 21	AC3	A	591	602	Right-handed alpha
Helix 22	AC4	A	613	625	Right-handed alpha
Helix 23	AC5	A	633	641	Right-handed alpha
Helix 24	AC6	A	649	653	Right-handed 310
Helix 25	AC7	A	660	664	Right-handed alpha
Helix 26	AC8	A	667	678	Right-handed alpha
Helix 27	AC9	A	687	701	Right-handed alpha
Helix 28	AD1	A	711	713	Right-handed 310
Helix 29	AD2	A	714	721	Right-handed alpha
Helix 30	AD3	A	732	738	Right-handed alpha
Helix 31	AD4	A	749	775	Right-handed alpha
Helix 32	AD5	A	775	789	Right-handed alpha
Helix 33	AD6	A	796	805	Right-handed alpha
Helix 34	AD7	A	808	815	Right-handed alpha
Helix 35	AD8	A	816	818	Right-handed 310
Helix 36	AD9	A	839	847	Right-handed alpha
Helix 37	AE1	A	849	869	Right-handed alpha
Helix 38	AE2	A	873	877	Right-handed 310
Helix 39	AE3	A	879	884	Right-handed alpha
Helix 40	AE4	A	900	932	Right-handed alpha
Helix 41	AE5	A	936	941	Right-handed alpha
Helix 42	AE6	A	944	964	Right-handed alpha
Helix 43	AE7	A	977	983	Right-handed 310
Helix 44	AE8	A	984	1005	Right-handed alpha
Helix 45	AE9	A	1008	1014	Right-handed alpha
Helix 46	AF1	B	28	60	Right-handed alpha
Helix 47	AF2	B	69	73	Right-handed 310
Helix 48	AF3	B	98	109	Right-handed alpha
Helix 49	AF4	B	110	112	Right-handed 310
Helix 50	AF5	B	152	156	Right-handed 310
Helix 51	AF6	B	219	224	Right-handed alpha
Helix 52	AF7	B	231	235	Right-handed 310
Helix 53	AF8	B	241	243	Right-handed 310
Helix 54	AF9	B	246	251	Right-handed alpha
Helix 55	AG1	C	22	31	Right-handed alpha
Helix 56	AG2	C	40	49	Right-handed alpha
Helix 57	AG3	C	57	69	Right-handed alpha
Helix 58	AG4	C	80	89	Right-handed alpha
Helix 59	AG5	C	92	115	Right-handed alpha
Helix 60	AG6	C	120	153	Right-handed alpha
Helix 61	AG7	C	176	178	Right-handed 310
Helix 62	AG8	C	208	213	Right-handed alpha
Helix 63	AG9	C	254	257	Right-handed 310
Helix 64	AH1	C	258	269	Right-handed alpha
Helix 65	AH2	C	275	307	Right-handed alpha
Helix 66	AH3	C	309	324	Right-handed alpha
Helix 67	AH4	C	328	347	Right-handed alpha
Helix 68	AH5	C	355	363	Right-handed alpha
Helix 69	AH6	C	408	421	Right-handed alpha
Helix 70	AH7	C	443	457	Right-handed alpha
Helix 71	AH8	C	460	466	Right-handed alpha
Helix 72	AH9	C	503	509	Right-handed alpha
Helix 73	AI1	C	524	541	Right-handed alpha
Helix 74	AI2	C	591	602	Right-handed alpha
Helix 75	AI3	C	613	625	Right-handed alpha
Helix 76	AI4	C	633	641	Right-handed alpha
Helix 77	AI5	C	649	653	Right-handed 310
Helix 78	AI6	C	660	664	Right-handed alpha
Helix 79	AI7	C	667	678	Right-handed alpha
Helix 80	AI8	C	687	701	Right-handed alpha
Helix 81	AI9	C	711	713	Right-handed 310
Helix 82	AJ1	C	714	721	Right-handed alpha
Helix 83	AJ2	C	732	738	Right-handed alpha
Helix 84	AJ3	C	749	775	Right-handed alpha
Helix 85	AJ4	C	775	789	Right-handed alpha
Helix 86	AJ5	C	796	805	Right-handed alpha
Helix 87	AJ6	C	808	815	Right-handed alpha
Helix 88	AJ7	C	816	818	Right-handed 310
Helix 89	AJ8	C	839	847	Right-handed alpha
Helix 90	AJ9	C	849	869	Right-handed alpha
Helix 91	AK1	C	873	877	Right-handed 310
Helix 92	AK2	C	879	884	Right-handed alpha
Helix 93	AK3	C	900	932	Right-handed alpha
Helix 94	AK4	C	936	941	Right-handed alpha
Helix 95	AK5	C	944	964	Right-handed alpha
Helix 96	AK6	C	977	983	Right-handed 310
Helix 97	AK7	C	984	1005	Right-handed alpha
Helix 98	AK8	C	1008	1014	Right-handed alpha
Helix 99	AK9	D	28	61	Right-handed alpha
Helix 100	AL1	D	69	73	Right-handed 310
Helix 101	AL2	D	98	109	Right-handed alpha
Helix 102	AL3	D	110	112	Right-handed 310
Helix 103	AL4	D	152	156	Right-handed 310
Helix 104	AL5	D	219	224	Right-handed alpha
Helix 105	AL6	D	231	235	Right-handed 310
Helix 106	AL7	D	241	243	Right-handed 310
Helix 107	AL8	D	246	251	Right-handed alpha
Helix 108	AL9	E	22	46	Right-handed alpha
Helix 109	AM1	G	22	45	Right-handed alpha

There are 20 sheets in PDB entry 7D93. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	174	first strand
Strand 2	A	161	166	anti-parallel
Strand 3	A	183	187	anti-parallel
Strand 4	A	241	253	anti-parallel
Strand 5	A	195	207	anti-parallel
Strand 6	A	218	219	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	174	first strand
Strand 2	A	161	166	anti-parallel
Strand 3	A	183	187	anti-parallel
Strand 4	A	241	253	anti-parallel
Strand 5	A	195	207	anti-parallel
Strand 6	A	235	236	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	351	first strand
Strand 2	A	741	743	anti-parallel
Strand 3	A	723	727	parallel
Strand 4	A	705	709	parallel
Strand 5	A	365	368	parallel
Strand 6	A	605	609	parallel
Strand 7	A	680	684	parallel
Strand 8	A	655	659	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	A	380	386	anti-parallel
Strand 3	A	577	585	anti-parallel
Strand 4	A	544	553	anti-parallel
Strand 5	A	496	502	anti-parallel
Strand 6	A	481	486	anti-parallel
Strand 7	A	469	473	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	A	380	386	anti-parallel
Strand 3	A	577	585	anti-parallel
Strand 4	A	513	516	parallel
Strand 5	A	519	521	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	440	441	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	891	892	first strand
Strand 2	A	898	899	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	79	first strand
Strand 2	B	175	180	anti-parallel
Strand 3	B	258	263	anti-parallel
Strand 4	B	227	230	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	296	301	parallel
Strand 3	B	272	278	anti-parallel
Strand 4	B	208	214	anti-parallel
Strand 5	B	237	239	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	148	149	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	174	first strand
Strand 2	C	161	166	anti-parallel
Strand 3	C	183	187	anti-parallel
Strand 4	C	241	253	anti-parallel
Strand 5	C	195	207	anti-parallel
Strand 6	C	218	219	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	174	first strand
Strand 2	C	161	166	anti-parallel
Strand 3	C	183	187	anti-parallel
Strand 4	C	241	253	anti-parallel
Strand 5	C	195	207	anti-parallel
Strand 6	C	235	236	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	351	first strand
Strand 2	C	741	743	anti-parallel
Strand 3	C	723	727	parallel
Strand 4	C	705	709	parallel
Strand 5	C	365	368	parallel
Strand 6	C	605	609	parallel
Strand 7	C	680	684	parallel
Strand 8	C	655	659	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	392	first strand
Strand 2	C	380	386	anti-parallel
Strand 3	C	577	585	anti-parallel
Strand 4	C	544	553	anti-parallel
Strand 5	C	496	502	anti-parallel
Strand 6	C	481	486	anti-parallel
Strand 7	C	469	473	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	392	first strand
Strand 2	C	380	386	anti-parallel
Strand 3	C	577	585	anti-parallel
Strand 4	C	513	516	parallel
Strand 5	C	519	521	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	426	first strand
Strand 2	C	440	441	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	891	892	first strand
Strand 2	C	898	899	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	79	first strand
Strand 2	D	178	180	anti-parallel
Strand 3	D	258	263	anti-parallel
Strand 4	D	227	230	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	90	first strand
Strand 2	D	296	301	parallel
Strand 3	D	272	278	anti-parallel
Strand 4	D	208	214	anti-parallel
Strand 5	D	237	239	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	D	148	149	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D93

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D93