Analysis of interatomic Contacts of Structural Units in PDB entry:
7D95


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D95 entry

There are 6 chains in PDB entry 7D95 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 75
A
 LEU 77GLU 108
A
 ASP 110GLU 188
B
 MET 1ILE 75
B
 LEU 77GLU 108
B
 ASP 110GLU 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7D95. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 22Right-handed alpha
Helix 2
AA2
A
34 41Right-handed alpha
Helix 3
AA3
A
54 58Right-handed 310
Helix 4
AA4
A
59 68Right-handed alpha
Helix 5
AA5
A
76 86Right-handed alpha
Helix 6
AA6
A
108 108Right-handed 310
Helix 7
AA7
A
110 113Right-handed 310
Helix 8
AA8
A
171 183Right-handed alpha
Helix 9
AA9
B
11 22Right-handed alpha
Helix 10
AB1
B
34 41Right-handed alpha
Helix 11
AB2
B
54 58Right-handed 310
Helix 12
AB3
B
59 68Right-handed alpha
Helix 13
AB4
B
76 86Right-handed alpha
Helix 14
AB5
B
108 108Right-handed 310
Helix 15
AB6
B
110 113Right-handed 310
Helix 16
AB7
B
171 183Right-handed alpha
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There are 4 sheets in PDB entry 7D95. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
2 6parallel
Strand 3
A
46 49parallel
Strand 4
A
72 75parallel
Strand 5
A
157 160parallel
Strand 6
A
149 152anti-parallel
Strand 7
A
136 142anti-parallel
Strand 8
A
99 105anti-parallel
Strand 9
A
118 123anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
127 131anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
2 6parallel
Strand 3
B
46 49parallel
Strand 4
B
72 75parallel
Strand 5
B
157 160parallel
Strand 6
B
149 152anti-parallel
Strand 7
B
136 141anti-parallel
Strand 8
B
99 105anti-parallel
Strand 9
B
118 123anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 92first strand
Strand 2
B
127 131anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il