Analysis of interatomic Contacts of Structural Units in PDB entry:
7D97


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D97 entry

There are 4 chains in PDB entry 7D97 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 188
B
 MET 1GLU 188
C
 MET 1PHE 187
D
 MET 1GLU 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 7D97. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 22Right-handed alpha
Helix 2
AA2
A
34 41Right-handed alpha
Helix 3
AA3
A
54 58Right-handed 310
Helix 4
AA4
A
59 68Right-handed alpha
Helix 5
AA5
A
76 86Right-handed alpha
Helix 6
AA6
A
109 113Right-handed 310
Helix 7
AA7
A
171 183Right-handed alpha
Helix 8
AA8
B
11 22Right-handed alpha
Helix 9
AA9
B
34 40Right-handed alpha
Helix 10
AB1
B
54 58Right-handed 310
Helix 11
AB2
B
59 68Right-handed alpha
Helix 12
AB3
B
76 86Right-handed alpha
Helix 13
AB4
B
109 113Right-handed 310
Helix 14
AB5
B
171 183Right-handed alpha
Helix 15
AB6
C
11 22Right-handed alpha
Helix 16
AB7
C
34 41Right-handed alpha
Helix 17
AB8
C
54 58Right-handed 310
Helix 18
AB9
C
59 68Right-handed alpha
Helix 19
AC1
C
76 86Right-handed alpha
Helix 20
AC2
C
109 113Right-handed 310
Helix 21
AC3
C
171 183Right-handed alpha
Helix 22
AC4
D
11 21Right-handed alpha
Helix 23
AC5
D
34 41Right-handed alpha
Helix 24
AC6
D
54 58Right-handed 310
Helix 25
AC7
D
59 68Right-handed alpha
Helix 26
AC8
D
76 86Right-handed alpha
Helix 27
AC9
D
171 183Right-handed alpha
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There are 6 sheets in PDB entry 7D97. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
2 6parallel
Strand 3
A
46 49parallel
Strand 4
A
72 75parallel
Strand 5
A
157 160parallel
Strand 6
A
149 152anti-parallel
Strand 7
A
136 141anti-parallel
Strand 8
A
99 105anti-parallel
Strand 9
A
118 123anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
128 131anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
2 6parallel
Strand 3
B
46 49parallel
Strand 4
B
72 75parallel
Strand 5
B
157 160parallel
Strand 6
B
145 152anti-parallel
Strand 7
B
136 142anti-parallel
Strand 8
B
89 105anti-parallel
Strand 9
B
118 131anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 30first strand
Strand 2
C
2 6parallel
Strand 3
C
46 49parallel
Strand 4
C
72 75parallel
Strand 5
C
157 160parallel
Strand 6
C
149 152anti-parallel
Strand 7
C
136 141anti-parallel
Strand 8
C
98 105anti-parallel
Strand 9
C
118 124anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 92first strand
Strand 2
C
127 131anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 30first strand
Strand 2
D
2 6parallel
Strand 3
D
46 49parallel
Strand 4
D
72 75parallel
Strand 5
D
157 160parallel
Strand 6
D
149 152anti-parallel
Strand 7
D
136 141anti-parallel
Strand 8
D
89 105anti-parallel
Strand 9
D
118 131anti-parallel
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