Analysis of interatomic Contacts of Structural Units in PDB entry:
7D98

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D98 entry

There are 6 chains in PDB entry 7D98 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	ASP 294
B	MET 1	ASP 294
P	MET 1	ALA 292
Q	MET 1	LYS 293
G	T 4	C 55
H	T 0	A 50

There are 51 helices in PDB entry 7D98. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	16	Right-handed alpha
Helix 2	AA2	A	17	26	Right-handed alpha
Helix 3	AA3	A	28	44	Right-handed alpha
Helix 4	AA4	A	61	88	Right-handed alpha
Helix 5	AA5	A	99	103	Right-handed 310
Helix 6	AA6	A	104	117	Right-handed alpha
Helix 7	AA7	A	128	139	Right-handed alpha
Helix 8	AA8	A	184	187	Right-handed 310
Helix 9	AA9	A	201	213	Right-handed alpha
Helix 10	AB1	A	225	235	Right-handed alpha
Helix 11	AB2	A	244	248	Right-handed alpha
Helix 12	AB3	A	278	291	Right-handed alpha
Helix 13	AB4	B	2	16	Right-handed alpha
Helix 14	AB5	B	19	25	Right-handed alpha
Helix 15	AB6	B	28	43	Right-handed alpha
Helix 16	AB7	B	61	87	Right-handed alpha
Helix 17	AB8	B	99	103	Right-handed 310
Helix 18	AB9	B	104	117	Right-handed alpha
Helix 19	AC1	B	128	139	Right-handed alpha
Helix 20	AC2	B	172	174	Right-handed 310
Helix 21	AC3	B	201	212	Right-handed alpha
Helix 22	AC4	B	225	235	Right-handed alpha
Helix 23	AC5	B	244	249	Right-handed alpha
Helix 24	AC6	B	278	294	Right-handed alpha
Helix 25	AC7	P	2	16	Right-handed alpha
Helix 26	AC8	P	19	26	Right-handed alpha
Helix 27	AC9	P	28	44	Right-handed alpha
Helix 28	AD1	P	58	87	Right-handed alpha
Helix 29	AD2	P	99	103	Right-handed 310
Helix 30	AD3	P	104	117	Right-handed alpha
Helix 31	AD4	P	130	139	Right-handed alpha
Helix 32	AD5	P	173	178	Right-handed alpha
Helix 33	AD6	P	184	187	Right-handed 310
Helix 34	AD7	P	201	213	Right-handed alpha
Helix 35	AD8	P	225	234	Right-handed alpha
Helix 36	AD9	P	244	248	Right-handed alpha
Helix 37	AE1	P	278	289	Right-handed alpha
Helix 38	AE2	P	290	292	Right-handed 310
Helix 39	AE3	Q	2	16	Right-handed alpha
Helix 40	AE4	Q	17	25	Right-handed alpha
Helix 41	AE5	Q	28	44	Right-handed alpha
Helix 42	AE6	Q	58	88	Right-handed alpha
Helix 43	AE7	Q	99	103	Right-handed 310
Helix 44	AE8	Q	104	117	Right-handed alpha
Helix 45	AE9	Q	128	137	Right-handed alpha
Helix 46	AF1	Q	172	177	Right-handed 310
Helix 47	AF2	Q	184	187	Right-handed 310
Helix 48	AF3	Q	202	214	Right-handed alpha
Helix 49	AF4	Q	225	235	Right-handed alpha
Helix 50	AF5	Q	244	249	Right-handed alpha
Helix 51	AF6	Q	278	291	Right-handed alpha

There are 13 sheets in PDB entry 7D98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	126	first strand
Strand 2	A	91	97	parallel
Strand 3	A	143	146	parallel
Strand 4	A	265	273	anti-parallel
Strand 5	A	155	170	anti-parallel
Strand 6	A	254	260	anti-parallel
Strand 7	A	180	182	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	126	first strand
Strand 2	A	91	97	parallel
Strand 3	A	143	146	parallel
Strand 4	A	265	273	anti-parallel
Strand 5	A	155	170	anti-parallel
Strand 6	A	240	243	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	219	222	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	126	first strand
Strand 2	B	92	97	parallel
Strand 3	B	143	146	parallel
Strand 4	B	264	273	anti-parallel
Strand 5	B	155	170	anti-parallel
Strand 6	B	240	243	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	126	first strand
Strand 2	B	92	97	parallel
Strand 3	B	143	146	parallel
Strand 4	B	264	273	anti-parallel
Strand 5	B	155	170	anti-parallel
Strand 6	B	254	260	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	193	first strand
Strand 2	B	219	222	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	48	49	first strand
Strand 2	P	56	57	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	120	126	first strand
Strand 2	P	91	97	parallel
Strand 3	P	143	146	parallel
Strand 4	P	266	273	anti-parallel
Strand 5	P	155	163	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	180	182	first strand
Strand 2	P	254	260	parallel
Strand 3	P	165	170	anti-parallel
Strand 4	P	240	243	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	191	193	first strand
Strand 2	P	219	222	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	120	126	first strand
Strand 2	Q	91	97	parallel
Strand 3	Q	143	146	parallel
Strand 4	Q	265	273	anti-parallel
Strand 5	Q	155	170	anti-parallel
Strand 6	Q	254	260	anti-parallel
Strand 7	Q	180	182	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	120	126	first strand
Strand 2	Q	91	97	parallel
Strand 3	Q	143	146	parallel
Strand 4	Q	265	273	anti-parallel
Strand 5	Q	155	170	anti-parallel
Strand 6	Q	240	243	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	191	193	first strand
Strand 2	Q	219	222	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D98

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D98